Variant report

Variant	rs35806656
Chromosome Location	chr14:71400009-71400010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71371849..71374730-chr14:71399686..71402743,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100731	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12100735	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12880570	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12881446	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12884478	0.88[AMR][1000 genomes]
rs12889463	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12892577	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12892737	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12893638	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12897490	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12897499	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17108917	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17108930	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs221895	0.83[AMR][1000 genomes]
rs2240532	0.88[AMR][1000 genomes]
rs2240534	0.88[AMR][1000 genomes]
rs2286308	0.82[AMR][1000 genomes]
rs2286309	0.88[AMR][1000 genomes]
rs2286313	0.82[AMR][1000 genomes]
rs2286315	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34219222	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34548016	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34761065	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35432764	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35561518	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35614357	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35719396	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36556	0.88[AMR][1000 genomes]
rs36557	0.80[AMR][1000 genomes]
rs36566	0.80[AMR][1000 genomes]
rs40356	0.94[AMR][1000 genomes]
rs56832842	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57537113	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58435681	0.88[AMR][1000 genomes]
rs59216102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71425301	0.88[AMR][1000 genomes]
rs8022928	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1049741	chr14:71233043-71462509	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1039769	chr14:71310954-71525720	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv542128	chr14:71310954-71525720	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1053303	chr14:71316325-71402971	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv565043	chr14:71395604-71625112	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71376000-71401000	Weak transcription	Lung	lung
2	chr14:71378000-71400600	Weak transcription	Fetal Kidney	kidney
3	chr14:71379600-71408200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:71379600-71410400	Weak transcription	Aorta	Aorta
5	chr14:71380400-71400800	Weak transcription	Fetal Intestine Large	intestine
6	chr14:71384000-71401200	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:71384200-71408400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:71384600-71402000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:71386800-71400600	Weak transcription	Fetal Stomach	stomach
10	chr14:71387200-71408400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:71388200-71402000	Weak transcription	HSMM	muscle
12	chr14:71388200-71410400	Weak transcription	Thymus	Thymus
13	chr14:71388400-71400800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:71388800-71400200	Weak transcription	Fetal Intestine Small	intestine
15	chr14:71388800-71400400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:71388800-71400600	Weak transcription	NHLF	lung
17	chr14:71388800-71408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:71389000-71400400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr14:71389800-71400600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr14:71392800-71401600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:71393200-71400800	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:71393400-71400200	Weak transcription	GM12878-XiMat	blood
23	chr14:71393400-71408800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:71393600-71400800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:71393800-71401200	Weak transcription	Left Ventricle	heart
26	chr14:71393800-71401800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr14:71393800-71409000	Weak transcription	Primary B cells from cord blood	blood
28	chr14:71397000-71400200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr14:71397000-71400200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr14:71397000-71403400	Weak transcription	Brain Anterior Caudate	brain
31	chr14:71397200-71400400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr14:71397200-71400800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr14:71397200-71401200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:71397600-71400200	Weak transcription	Right Ventricle	heart
35	chr14:71397600-71401200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:71397800-71400800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr14:71398000-71400400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:71398000-71400600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:71398000-71401200	Weak transcription	Ovary	ovary
40	chr14:71398000-71408000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:71398000-71408400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr14:71398200-71400600	Weak transcription	NHEK	skin
43	chr14:71398200-71408600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr14:71398400-71400200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:71398400-71410400	Weak transcription	HMEC	breast
46	chr14:71398600-71402000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:71398800-71408600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:71399600-71401200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr14:71399600-71402600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr14:71399800-71400400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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