Variant report

Variant	rs35810358
Chromosome Location	chr4:148787196-148787197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148605054..148606838-chr4:148786766..148789557,2	MCF-7	breast:
2	chr4:148628378..148630020-chr4:148787161..148788732,34	MCF-7	breast:
3	chr4:148602747..148604694-chr4:148786468..148788057,2	MCF-7	breast:
4	chr4:148509882..148511690-chr4:148787031..148789794,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164169	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10000278	0.98[EUR][1000 genomes]
rs10001688	0.90[EUR][1000 genomes]
rs10001756	0.92[EUR][1000 genomes]
rs10003507	0.86[EUR][1000 genomes]
rs10004138	0.88[EUR][1000 genomes]
rs10004691	0.90[EUR][1000 genomes]
rs10004792	0.86[EUR][1000 genomes]
rs10014593	0.86[EUR][1000 genomes]
rs10014696	0.98[EUR][1000 genomes]
rs10015875	0.92[EUR][1000 genomes]
rs10018820	0.80[EUR][1000 genomes]
rs10025069	0.92[EUR][1000 genomes]
rs10026985	0.92[EUR][1000 genomes]
rs10030358	0.86[EUR][1000 genomes]
rs10049932	0.86[EUR][1000 genomes]
rs1013842	0.82[AFR][1000 genomes]
rs11099670	0.89[AFR][1000 genomes]
rs11099671	0.92[EUR][1000 genomes]
rs11099672	0.87[EUR][1000 genomes]
rs11734553	0.83[EUR][1000 genomes]
rs11735412	0.92[EUR][1000 genomes]
rs11737346	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12331562	0.98[EUR][1000 genomes]
rs12509618	0.83[EUR][1000 genomes]
rs12511313	0.80[AFR][1000 genomes]
rs12513192	0.94[EUR][1000 genomes]
rs12643550	0.87[EUR][1000 genomes]
rs13129325	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13151898	0.90[EUR][1000 genomes]
rs1369958	0.86[EUR][1000 genomes]
rs1469865	0.80[AFR][1000 genomes]
rs17024037	0.90[EUR][1000 genomes]
rs17613979	0.94[EUR][1000 genomes]
rs17614025	0.85[EUR][1000 genomes]
rs17676080	0.92[EUR][1000 genomes]
rs2043643	0.94[EUR][1000 genomes]
rs2043645	0.90[EUR][1000 genomes]
rs28576385	0.92[EUR][1000 genomes]
rs28614116	0.90[EUR][1000 genomes]
rs2884400	0.92[EUR][1000 genomes]
rs34970355	0.83[EUR][1000 genomes]
rs35243600	0.90[EUR][1000 genomes]
rs35899247	0.90[EUR][1000 genomes]
rs3893175	0.87[EUR][1000 genomes]
rs3990920	0.89[EUR][1000 genomes]
rs4240341	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4491995	0.86[EUR][1000 genomes]
rs4571312	0.94[EUR][1000 genomes]
rs4627844	0.83[EUR][1000 genomes]
rs4835103	0.90[EUR][1000 genomes]
rs4835109	0.87[EUR][1000 genomes]
rs4835110	0.87[EUR][1000 genomes]
rs4835463	0.89[AFR][1000 genomes]
rs55650760	0.80[EUR][1000 genomes]
rs55820558	0.94[EUR][1000 genomes]
rs62330732	0.89[EUR][1000 genomes]
rs62330735	0.89[EUR][1000 genomes]
rs62330737	0.85[EUR][1000 genomes]
rs6535565	0.94[AFR][1000 genomes]
rs6535569	0.83[EUR][1000 genomes]
rs6811769	0.83[EUR][1000 genomes]
rs6818371	0.90[EUR][1000 genomes]
rs6832527	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6840771	0.90[EUR][1000 genomes]
rs6843392	0.92[EUR][1000 genomes]
rs6856273	0.92[EUR][1000 genomes]
rs7656471	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7660508	0.92[EUR][1000 genomes]
rs7666127	0.80[EUR][1000 genomes]
rs7677632	0.90[EUR][1000 genomes]
rs7698670	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs893033	0.94[EUR][1000 genomes]
rs9991741	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9994650	0.92[EUR][1000 genomes]
rs9995956	0.98[EUR][1000 genomes]
rs9996209	0.80[EUR][1000 genomes]
rs9997027	0.98[EUR][1000 genomes]
rs9999321	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148763200-148796200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:148764600-148787800	Weak transcription	HMEC	breast
3	chr4:148766400-148787600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:148766600-148796200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:148767600-148796400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:148768400-148815600	Weak transcription	Primary T cells from cord blood	blood
7	chr4:148770400-148796200	Weak transcription	Fetal Kidney	kidney
8	chr4:148772000-148806000	Weak transcription	Fetal Thymus	thymus
9	chr4:148776400-148787200	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:148777000-148796200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:148777000-148823000	Weak transcription	Small Intestine	intestine
12	chr4:148777400-148796600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:148777800-148796200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:148778600-148787400	Weak transcription	Hela-S3	cervix
15	chr4:148779800-148793800	Weak transcription	Fetal Lung	lung
16	chr4:148782000-148799400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:148782800-148787800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:148783000-148796200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:148783000-148796200	Weak transcription	Thymus	Thymus
20	chr4:148783200-148787400	Enhancers	Ovary	ovary
21	chr4:148783400-148796400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:148783400-148796400	Weak transcription	Lung	lung
23	chr4:148783600-148789800	Weak transcription	Fetal Intestine Small	intestine
24	chr4:148783600-148796200	Weak transcription	Esophagus	oesophagus
25	chr4:148783600-148796200	Weak transcription	Placenta	Placenta
26	chr4:148783800-148787200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:148783800-148787200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:148783800-148787200	Weak transcription	Right Atrium	heart
29	chr4:148783800-148788400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:148783800-148788400	Weak transcription	Fetal Stomach	stomach
31	chr4:148783800-148789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:148783800-148790000	Weak transcription	Left Ventricle	heart
33	chr4:148783800-148796200	Weak transcription	Fetal Intestine Large	intestine
34	chr4:148783800-148796200	Weak transcription	Gastric	stomach
35	chr4:148783800-148796200	Weak transcription	Right Ventricle	heart
36	chr4:148784200-148787200	Weak transcription	Brain Germinal Matrix	brain
37	chr4:148784200-148787200	Enhancers	Rectal Smooth Muscle	rectum
38	chr4:148784200-148788400	Enhancers	Colon Smooth Muscle	Colon
39	chr4:148784400-148810800	Weak transcription	Fetal Heart	heart
40	chr4:148784600-148796400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr4:148785000-148787200	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr4:148785200-148787200	Weak transcription	HSMMtube	muscle
43	chr4:148785400-148796200	Weak transcription	GM12878-XiMat	blood
44	chr4:148785600-148788400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:148785600-148796200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr4:148785800-148787800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:148786000-148787200	Weak transcription	Aorta	Aorta
48	chr4:148786000-148787400	Strong transcription	NH-A	brain
49	chr4:148786000-148787600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:148786000-148788200	Weak transcription	NHDF-Ad	bronchial

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