Variant report

Variant	rs35812497
Chromosome Location	chr5:108563812-108563813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11739672	0.84[ASN][1000 genomes]
rs11743452	0.84[ASN][1000 genomes]
rs11744353	0.84[ASN][1000 genomes]
rs11746207	0.84[ASN][1000 genomes]
rs11748450	0.84[ASN][1000 genomes]
rs11749718	0.81[ASN][1000 genomes]
rs1363212	0.82[ASN][1000 genomes]
rs1363213	0.84[ASN][1000 genomes]
rs1592807	0.84[ASN][1000 genomes]
rs1592811	0.84[ASN][1000 genomes]
rs17161655	0.91[ASN][1000 genomes]
rs17161659	0.89[ASN][1000 genomes]
rs17161665	0.84[ASN][1000 genomes]
rs17161674	0.84[ASN][1000 genomes]
rs1833567	0.84[ASN][1000 genomes]
rs1833568	0.84[ASN][1000 genomes]
rs1833569	0.84[ASN][1000 genomes]
rs1862201	0.84[ASN][1000 genomes]
rs1862202	0.84[ASN][1000 genomes]
rs1862203	0.84[ASN][1000 genomes]
rs1895200	0.84[ASN][1000 genomes]
rs1895201	0.81[ASN][1000 genomes]
rs36123121	0.84[ASN][1000 genomes]
rs4388251	0.84[ASN][1000 genomes]
rs4388252	0.80[ASN][1000 genomes]
rs4392675	0.84[ASN][1000 genomes]
rs4438924	0.80[ASN][1000 genomes]
rs4541698	0.80[ASN][1000 genomes]
rs57629433	0.84[ASN][1000 genomes]
rs60335509	0.84[ASN][1000 genomes]
rs60878839	0.84[ASN][1000 genomes]
rs61701247	0.91[ASN][1000 genomes]
rs6594365	0.84[ASN][1000 genomes]
rs6863688	0.84[ASN][1000 genomes]
rs6863893	0.84[ASN][1000 genomes]
rs6879134	0.84[ASN][1000 genomes]
rs7700458	0.84[ASN][1000 genomes]
rs7704359	0.84[ASN][1000 genomes]
rs7705919	0.84[ASN][1000 genomes]
rs7721272	0.84[ASN][1000 genomes]
rs7721427	0.84[ASN][1000 genomes]
rs7721730	0.84[ASN][1000 genomes]
rs7721870	0.84[ASN][1000 genomes]
rs7722100	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108561600-108564400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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