Variant report

Variant	rs35813951
Chromosome Location	chr3:28316005-28316006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10510606	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11129312	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11129313	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11129314	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11129317	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708368	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11708635	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11717202	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11921526	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12106806	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12107556	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12485853	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12485858	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12497510	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13069450	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13069777	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13073936	0.89[EUR][1000 genomes]
rs13074515	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13085236	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13085477	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13092179	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1606391	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34109684	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34692982	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35504778	0.98[EUR][1000 genomes]
rs4680746	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6782956	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6785465	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6792110	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6792215	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6798266	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7624015	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7624111	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28284000-28317200	Weak transcription	Gastric	stomach
2	chr3:28284400-28321800	Weak transcription	NHLF	lung
3	chr3:28287600-28317000	Weak transcription	Pancreas	Pancrea
4	chr3:28294800-28316400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:28295600-28318200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:28303000-28316800	Weak transcription	Right Ventricle	heart
7	chr3:28303400-28322200	Weak transcription	Small Intestine	intestine
8	chr3:28303600-28340600	Weak transcription	NHEK	skin
9	chr3:28303800-28320800	Weak transcription	Placenta	Placenta
10	chr3:28304200-28332400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:28305600-28322600	Weak transcription	Osteobl	bone
12	chr3:28306200-28316600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:28306400-28332400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:28306600-28335800	Weak transcription	Hela-S3	cervix
15	chr3:28307400-28317400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:28307600-28317000	Weak transcription	Fetal Thymus	thymus
17	chr3:28309000-28336600	Weak transcription	HUVEC	blood vessel
18	chr3:28309400-28317000	Weak transcription	HSMM	muscle
19	chr3:28309600-28317000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:28310000-28317000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:28310400-28321200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:28311200-28317200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:28311400-28319000	Weak transcription	Spleen	Spleen
24	chr3:28311600-28317000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:28311600-28317000	Weak transcription	Aorta	Aorta
26	chr3:28311600-28317000	Weak transcription	Esophagus	oesophagus
27	chr3:28311600-28319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:28312600-28316800	ZNF genes & repeats	Fetal Lung	lung
29	chr3:28313400-28322800	Weak transcription	Colonic Mucosa	Colon
30	chr3:28313600-28316200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:28313600-28316200	ZNF genes & repeats	Fetal Intestine Large	intestine
32	chr3:28313600-28316400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:28313800-28316200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr3:28313800-28316200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr3:28313800-28316200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:28313800-28316600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:28313800-28316600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
38	chr3:28313800-28317200	ZNF genes & repeats	GM12878-XiMat	blood
39	chr3:28314000-28316200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr3:28314200-28316600	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr3:28314200-28332400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:28314400-28316800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:28314400-28316800	Weak transcription	Thymus	Thymus
44	chr3:28314400-28317000	Weak transcription	Lung	lung
45	chr3:28314400-28317600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:28314400-28318600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:28314400-28332400	Weak transcription	Ovary	ovary
48	chr3:28314400-28365400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:28314600-28316400	Weak transcription	Fetal Stomach	stomach
50	chr3:28314600-28316600	Weak transcription	Fetal Intestine Small	intestine

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