Variant report

Variant	rs35817359
Chromosome Location	chr15:83775638-83775639
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:83775593-83776724	H1-neurons	neurons:	n/a	n/a
2	ZNF263	chr15:83775492-83776486	HEK293-T-REx	kidney:	n/a	n/a
3	SIN3A	chr15:83775540-83775878	H1-hESC	embryonic stem cell:	n/a	n/a
4	TBL1XR1	chr15:83775562-83775895	K562	blood:	n/a	n/a
5	MAX	chr15:83775633-83776630	A549	lung:	n/a	chr15:83776309-83776318
6	EP300	chr15:83775619-83775884	K562	blood:	n/a	chr15:83775642-83775656 chr15:83775638-83775652 chr15:83775634-83775648
7	GABPA	chr15:83775628-83776091	A549	lung:	n/a	n/a
8	TAL1	chr15:83775611-83775871	K562	blood:	n/a	n/a
9	MYC	chr15:83775548-83776369	K562	blood:	n/a	chr15:83776309-83776318
10	ZNF384	chr15:83775426-83776048	K562	blood:	n/a	n/a
11	NR2F2	chr15:83775554-83775899	K562	blood:	n/a	n/a
12	MYC	chr15:83775636-83776612	K562	blood:	n/a	chr15:83776309-83776318
13	GABPA	chr15:83775605-83776450	H1-hESC	embryonic stem cell:	n/a	chr15:83776355-83776364 chr15:83776361-83776370 chr15:83776317-83776326 chr15:83776268-83776277
14	GATA1	chr15:83775312-83776113	PBDE	blood:	n/a	n/a
15	RCOR1	chr15:83775505-83776504	K562	blood:	n/a	n/a
16	ZNF143	chr15:83775632-83775879	K562	blood:	n/a	n/a
17	FOXA2	chr15:83775508-83775987	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:83734435..83737238-chr15:83775284..83776851,2	MCF-7	breast:
2	chr15:83734097..83737104-chr15:83774428..83777906,3	MCF-7	breast:
3	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
4	chr15:83773353..83776031-chr15:83781914..83783541,2	K562	blood:
5	chr15:83712253..83714885-chr15:83774266..83777073,2	K562	blood:

Variant related genes	Relation type
TM6SF1	TF binding region
ENSG00000263643	Chromatin interaction
ENSG00000259308	Chromatin interaction
ENSG00000260579	Chromatin interaction
ENSG00000064726	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3392859	chr15:83775373-83777921	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83773400-83775800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:83774400-83775800	Weak transcription	Lung	lung
3	chr15:83775200-83776800	Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr15:83775400-83775800	Bivalent Enhancer	Placenta	Placenta
5	chr15:83775400-83775800	Enhancers	Gastric	stomach
6	chr15:83775400-83775800	Enhancers	Left Ventricle	heart
7	chr15:83775400-83775800	Enhancers	HSMM	muscle
8	chr15:83775400-83775800	Flanking Active TSS	K562	blood
9	chr15:83775400-83775800	Bivalent Enhancer	NH-A	brain
10	chr15:83775400-83776000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:83775400-83776000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
12	chr15:83775400-83776000	Enhancers	Fetal Heart	heart
13	chr15:83775400-83776000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
14	chr15:83775400-83776000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr15:83775400-83776000	Flanking Bivalent TSS/Enh	A549	lung
16	chr15:83775400-83776800	Active TSS	Primary T cells from cord blood	blood
17	chr15:83775400-83776800	Active TSS	Brain Cingulate Gyrus	brain
18	chr15:83775400-83776800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:83775400-83777000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr15:83775400-83777000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr15:83775400-83777000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
22	chr15:83775600-83775800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:83775600-83775800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:83775600-83775800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr15:83775600-83775800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr15:83775600-83775800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:83775600-83775800	Bivalent/Poised TSS	Primary T helper cells fromperipheralblood	blood
28	chr15:83775600-83775800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:83775600-83775800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:83775600-83775800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:83775600-83775800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:83775600-83775800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
33	chr15:83775600-83775800	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
34	chr15:83775600-83775800	Active TSS	Brain Substantia Nigra	brain
35	chr15:83775600-83775800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
36	chr15:83775600-83775800	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
37	chr15:83775600-83775800	Bivalent/Poised TSS	Fetal Kidney	kidney
38	chr15:83775600-83775800	Bivalent Enhancer	Fetal Lung	lung
39	chr15:83775600-83775800	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
40	chr15:83775600-83775800	Bivalent Enhancer	Fetal Stomach	stomach
41	chr15:83775600-83775800	Bivalent Enhancer	Fetal Thymus	thymus
42	chr15:83775600-83775800	Enhancers	Pancreas	Pancrea
43	chr15:83775600-83775800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
44	chr15:83775600-83775800	Enhancers	Dnd41	blood
45	chr15:83775600-83775800	Bivalent Enhancer	HMEC	breast
46	chr15:83775600-83776000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr15:83775600-83776000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
48	chr15:83775600-83776000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
49	chr15:83775600-83776000	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
50	chr15:83775600-83776000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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