Variant report

Variant	rs35821317
Chromosome Location	chr4:171964764-171964765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:171963447..171966281-chr4:171969448..171971001,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10011354	0.81[ASN][1000 genomes]
rs10012648	0.83[ASN][1000 genomes]
rs10428454	0.83[ASN][1000 genomes]
rs11132866	0.81[ASN][1000 genomes]
rs13132033	1.00[ASN][1000 genomes]
rs13138342	0.83[ASN][1000 genomes]
rs13148831	0.81[ASN][1000 genomes]
rs13151801	0.83[ASN][1000 genomes]
rs1396325	0.81[ASN][1000 genomes]
rs1508507	0.81[ASN][1000 genomes]
rs1508515	0.81[ASN][1000 genomes]
rs2048199	0.83[ASN][1000 genomes]
rs2048201	0.83[ASN][1000 genomes]
rs2174943	0.83[ASN][1000 genomes]
rs2332085	0.81[ASN][1000 genomes]
rs2332086	0.81[ASN][1000 genomes]
rs2332087	0.83[ASN][1000 genomes]
rs25511	0.83[ASN][1000 genomes]
rs25512	0.83[ASN][1000 genomes]
rs35171590	0.81[ASN][1000 genomes]
rs35409203	0.92[ASN][1000 genomes]
rs35941242	0.83[ASN][1000 genomes]
rs4692627	0.81[ASN][1000 genomes]
rs4692859	0.81[ASN][1000 genomes]
rs56223128	0.81[ASN][1000 genomes]
rs56886621	0.83[ASN][1000 genomes]
rs61012267	0.83[ASN][1000 genomes]
rs61448487	0.83[ASN][1000 genomes]
rs62344475	0.83[ASN][1000 genomes]
rs62344476	0.83[ASN][1000 genomes]
rs62344478	0.83[ASN][1000 genomes]
rs6419980	0.83[ASN][1000 genomes]
rs6553554	0.83[ASN][1000 genomes]
rs6553556	0.83[ASN][1000 genomes]
rs6553557	0.83[ASN][1000 genomes]
rs6553558	0.83[ASN][1000 genomes]
rs67084214	0.92[ASN][1000 genomes]
rs6811103	0.83[ASN][1000 genomes]
rs6811337	0.83[ASN][1000 genomes]
rs6812562	0.83[ASN][1000 genomes]
rs6817733	0.83[ASN][1000 genomes]
rs6819553	0.83[ASN][1000 genomes]
rs6827582	0.83[ASN][1000 genomes]
rs6849128	0.83[ASN][1000 genomes]
rs6858075	0.81[ASN][1000 genomes]
rs72706514	0.83[ASN][1000 genomes]
rs7340816	0.83[ASN][1000 genomes]
rs7663696	0.83[ASN][1000 genomes]
rs7673070	0.83[ASN][1000 genomes]
rs9968437	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	esv3399627	chr4:171963202-171966150	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv461836	chr4:171963233-172494233	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv596169	chr4:171963233-172494233	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171964000-171964800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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