Variant report

Variant	rs35821663
Chromosome Location	chr1:120156788-120156789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:120156150..120157072-chr1:120189041..120189869,2	MCF-7	breast:
2	chr1:120155133..120157085-chr1:120217009..120218744,10	K562	blood:
3	chr1:120156082..120157034-chr1:120205464..120206953,8	K562	blood:
4	chr1:120156097..120157073-chr1:120205512..120206469,8	MCF-7	breast:
5	chr1:120156408..120157049-chr1:120218285..120218819,2	MCF-7	breast:
6	chr1:120156126..120157196-chr1:120217116..120218704,11	MCF-7	breast:
7	chr1:120156154..120156980-chr1:120205229..120206054,4	MCF-7	breast:
8	chr1:120156759..120158613-chr1:120204611..120207456,2	MCF-7	breast:
9	chr1:120091982..120092950-chr1:120156090..120157044,3	MCF-7	breast:

No data

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10802119	0.89[EUR][1000 genomes]
rs10802125	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10923868	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10923870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10923872	0.93[EUR][1000 genomes]
rs10923873	0.92[EUR][1000 genomes]
rs10923874	0.89[EUR][1000 genomes]
rs10923876	0.92[EUR][1000 genomes]
rs11586489	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119140	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121447	1.00[ASN][1000 genomes]
rs12127605	1.00[ASN][1000 genomes]
rs12129705	1.00[ASN][1000 genomes]
rs12139088	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144094	1.00[ASN][1000 genomes]
rs17258348	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34662109	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077553	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4481896	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4659210	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4659212	0.92[EUR][1000 genomes]
rs56051540	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56096705	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689350	0.92[EUR][1000 genomes]
rs72695107	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72695109	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72695117	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72695123	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv1000391	chr1:119837978-120287056	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv535077	chr1:119837978-120287056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv1000939	chr1:119983342-120471049	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	esv2757749	chr1:120016696-120214577	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2758964	chr1:120016696-120214577	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv946186	chr1:120091427-120161787	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv2756860	chr1:120098661-120162442	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv463317	chr1:120107602-120162787	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv547618	chr1:120107602-120162787	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3379396	chr1:120126720-120157658	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv872179	chr1:120131597-120162787	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:120115200-120160800	Weak transcription	Gastric	stomach
2	chr1:120146200-120165000	Weak transcription	Aorta	Aorta
3	chr1:120147400-120160800	Weak transcription	Psoas Muscle	Psoas
4	chr1:120149600-120160800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:120150200-120159200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:120151200-120159200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:120151200-120160400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:120152200-120167800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:120153200-120164400	Weak transcription	Fetal Intestine Small	intestine
10	chr1:120153400-120160800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:120154400-120158800	Weak transcription	GM12878-XiMat	blood
12	chr1:120154400-120163400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:120154400-120167400	Weak transcription	Brain Substantia Nigra	brain
14	chr1:120154600-120159200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:120154600-120163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:120154600-120164200	Weak transcription	Fetal Intestine Large	intestine
17	chr1:120154600-120165000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:120154600-120165000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:120154600-120165000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr1:120154800-120160200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:120154800-120164200	Weak transcription	Liver	Liver
22	chr1:120154800-120164600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:120154800-120164800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:120154800-120165000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:120154800-120165200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr1:120154800-120165400	Weak transcription	Fetal Brain Male	brain
27	chr1:120154800-120173600	Weak transcription	Brain Anterior Caudate	brain
28	chr1:120155200-120164200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr1:120156000-120157200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr1:120156200-120156800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:120156200-120157000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:120156200-120157200	Enhancers	NHEK	skin
33	chr1:120156200-120158200	Enhancers	Fetal Heart	heart
34	chr1:120156600-120156800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:120156600-120156800	Enhancers	Brain Cingulate Gyrus	brain
36	chr1:120156600-120156800	Enhancers	Colonic Mucosa	Colon
37	chr1:120156600-120156800	Enhancers	Duodenum Mucosa	Duodenum
38	chr1:120156600-120156800	Enhancers	HUVEC	blood vessel
39	chr1:120156600-120156800	Enhancers	NHDF-Ad	bronchial
40	chr1:120156600-120157000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:120156600-120157000	Enhancers	H9 Cell Line	embryonic stem cell
42	chr1:120156600-120157000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr1:120156600-120157000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr1:120156600-120157000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr1:120156600-120157000	Enhancers	Adipose Nuclei	Adipose
46	chr1:120156600-120157000	Enhancers	Fetal Stomach	stomach
47	chr1:120156600-120157000	Enhancers	Ovary	ovary
48	chr1:120156600-120157200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:120156600-120157200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:120156600-120157200	Enhancers	Colon Smooth Muscle	Colon

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