Variant report

Variant	rs35822807
Chromosome Location	chr18:7959033-7959034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10153443	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12326176	0.86[EUR][1000 genomes]
rs12326185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12954431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12956961	0.90[EUR][1000 genomes]
rs12957388	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12957993	0.90[EUR][1000 genomes]
rs12959314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12960276	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12963759	0.91[EUR][1000 genomes]
rs12966777	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12968232	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13381485	0.86[EUR][1000 genomes]
rs16952705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16952722	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28434244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34017251	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34046553	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34049036	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34296167	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34554615	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34580701	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35308699	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35434291	0.83[EUR][1000 genomes]
rs35521625	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35558945	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35830277	0.87[EUR][1000 genomes]
rs36093720	0.86[EUR][1000 genomes]
rs7239786	0.85[EUR][1000 genomes]
rs7240582	0.86[EUR][1000 genomes]
rs8087770	0.86[EUR][1000 genomes]
rs8087884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8089133	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8092781	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9807495	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9952741	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9956981	0.86[EUR][1000 genomes]
rs9961079	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7932200-7961000	Weak transcription	HepG2	liver
2	chr18:7941800-7966400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr18:7947200-7981400	Weak transcription	Fetal Stomach	stomach
4	chr18:7947400-7959200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr18:7947400-7963400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:7947400-7963600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:7947400-7965600	Weak transcription	Thymus	Thymus
8	chr18:7947800-7967600	Weak transcription	Primary T cells from cord blood	blood
9	chr18:7948000-7959600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr18:7948000-7965800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr18:7948000-7967200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr18:7948000-7975000	Weak transcription	Pancreas	Pancrea
13	chr18:7951200-7963400	Weak transcription	Adipose Nuclei	Adipose
14	chr18:7951600-7965800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr18:7954400-7966000	Weak transcription	Fetal Kidney	kidney
16	chr18:7955400-7965200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr18:7955600-7962000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr18:7955600-7962400	Weak transcription	Psoas Muscle	Psoas
19	chr18:7955600-7963400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr18:7956000-7965000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr18:7956000-7966200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr18:7956000-7980800	Weak transcription	Fetal Thymus	thymus
23	chr18:7956000-7982400	Weak transcription	Fetal Muscle Leg	muscle
24	chr18:7956200-7962400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr18:7956800-7959800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr18:7957400-7960000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr18:7957600-7965200	Weak transcription	Lung	lung
28	chr18:7957600-7980600	Weak transcription	Right Ventricle	heart
29	chr18:7958200-7959200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr18:7958200-7959200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr18:7958400-7959200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr18:7958400-7959200	Flanking Active TSS	HUVEC	blood vessel
33	chr18:7958400-7959200	Flanking Active TSS	NHLF	lung
34	chr18:7958400-7959200	Flanking Active TSS	Osteobl	bone
35	chr18:7958400-7959400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr18:7958400-7959800	Enhancers	Small Intestine	intestine
37	chr18:7958600-7963200	Weak transcription	Brain Anterior Caudate	brain
38	chr18:7958800-7959200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr18:7958800-7959200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr18:7958800-7959400	Enhancers	Left Ventricle	heart
41	chr18:7958800-7963400	Weak transcription	Aorta	Aorta
42	chr18:7959000-7959200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr18:7959000-7959200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr18:7959000-7959200	Enhancers	NH-A	brain
45	chr18:7959000-7959400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr18:7959000-7959400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr18:7959000-7959400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr18:7959000-7959600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr18:7959000-7960000	Enhancers	A549	lung
50	chr18:7959000-7960000	Enhancers	Hela-S3	cervix

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