Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10021978	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10025573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1385761	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1485830	0.90[ASN][1000 genomes]
rs17540786	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs28522756	0.90[ASN][1000 genomes]
rs28613858	0.90[ASN][1000 genomes]
rs2875086	0.92[ASN][1000 genomes]
rs358246	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs358252	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs358253	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs358254	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs358255	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs358256	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs358260	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs370843	0.87[CEU][hapmap]
rs4103517	0.90[ASN][1000 genomes]
rs4103518	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs4697338	0.84[ASN][1000 genomes]
rs4697339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4697340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs55897773	0.83[EUR][1000 genomes]
rs55932425	0.90[ASN][1000 genomes]
rs56098468	0.81[EUR][1000 genomes]
rs61794890	0.90[ASN][1000 genomes]
rs61794891	0.90[ASN][1000 genomes]
rs6448178	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005733	chr4:22747306-22833517	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520813	chr4:22783714-22824021	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22769400-22821200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:22780200-22819400	Weak transcription	Liver	Liver
3	chr4:22781000-22788800	Weak transcription	Fetal Intestine Large	intestine
4	chr4:22784800-22788200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:22786000-22828600	Weak transcription	Fetal Intestine Small	intestine

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