Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10021978	0.83[ASW][hapmap];0.87[LWK][hapmap];0.96[YRI][hapmap]
rs10025573	0.83[ASW][hapmap];0.88[YRI][hapmap]
rs118834	0.82[ASN][1000 genomes]
rs1385761	0.88[YRI][hapmap]
rs183084	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28522756	0.87[AFR][1000 genomes]
rs3099557	0.81[ASN][1000 genomes]
rs358228	0.81[ASN][1000 genomes]
rs358235	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs358236	0.82[ASN][1000 genomes]
rs358239	0.82[ASN][1000 genomes]
rs358240	0.81[ASN][1000 genomes]
rs358251	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs358257	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs358258	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs358261	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs369697	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs370843	0.80[JPT][hapmap]
rs420777	0.82[ASN][1000 genomes]
rs4697338	0.83[AFR][1000 genomes]
rs4697339	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs4697340	0.89[ASW][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4697344	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6448178	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005733	chr4:22747306-22833517	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520813	chr4:22783714-22824021	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22769400-22821200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:22780200-22819400	Weak transcription	Liver	Liver
3	chr4:22780800-22785200	Weak transcription	Fetal Intestine Small	intestine
4	chr4:22781000-22788800	Weak transcription	Fetal Intestine Large	intestine
5	chr4:22783400-22784800	Enhancers	Primary monocytes fromperipheralblood	blood

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