Variant report

Variant	rs35827395
Chromosome Location	chr2:168337628-168337629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1112983	0.94[EUR][1000 genomes]
rs11899757	0.96[EUR][1000 genomes]
rs12105560	0.93[EUR][1000 genomes]
rs1227120	0.93[EUR][1000 genomes]
rs1238298	0.91[EUR][1000 genomes]
rs12466695	0.95[EUR][1000 genomes]
rs12990145	0.80[EUR][1000 genomes]
rs12996381	0.95[EUR][1000 genomes]
rs13032189	0.86[EUR][1000 genomes]
rs1541889	0.89[EUR][1000 genomes]
rs1653420	0.90[EUR][1000 genomes]
rs1653425	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1653430	0.93[EUR][1000 genomes]
rs16853648	0.90[EUR][1000 genomes]
rs1730713	0.92[EUR][1000 genomes]
rs1730725	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1813255	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1919854	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1919855	0.94[EUR][1000 genomes]
rs1983514	0.95[EUR][1000 genomes]
rs35523753	0.93[EUR][1000 genomes]
rs35580310	0.93[EUR][1000 genomes]
rs4667955	0.90[EUR][1000 genomes]
rs6433000	0.92[EUR][1000 genomes]
rs6710395	0.90[EUR][1000 genomes]
rs7567362	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168336000-168338400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:168336000-168338400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:168336000-168338600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:168336200-168337800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:168336200-168338200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:168336200-168338200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr2:168336200-168338800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:168336600-168338200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:168337000-168337800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:168337000-168338200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:168337000-168338400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:168337000-168340400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:168337000-168355400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:168337200-168338200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:168337200-168348200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:168337400-168338400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:168337600-168337800	Bivalent Enhancer	HepG2	liver
18	chr2:168337600-168338400	Weak transcription	Colon Smooth Muscle	Colon
19	chr2:168337600-168338800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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