Variant report

Variant	rs35829015
Chromosome Location	chr12:116973230-116973231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr12:116972921-116973324	GM12878	blood:	n/a	n/a
2	REST	chr12:116970601-116973294	H1-neurons	neurons:	n/a	n/a
3	ZNF384	chr12:116972889-116973371	GM12878	blood:	n/a	n/a
4	YY1	chr12:116972935-116973289	GM12892	blood:	n/a	n/a
5	YY1	chr12:116972953-116973323	GM12878	blood:	n/a	n/a
6	ZNF384	chr12:116973004-116973553	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:116968953..116973759-chr12:116995509..116998903,7	K562	blood:
2	chr12:116712747..116717142-chr12:116969029..116973550,6	MCF-7	breast:
3	chr12:116971915..116975712-chr12:116994698..116997472,3	MCF-7	breast:
4	chr12:116938735..116941447-chr12:116971808..116973805,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAP1LC3B2-2	chr12:116971771-116973326	ENSG00000196668
2	lnc-MAP1LC3B2-2	chr12:116971673-116974016	XLOC_009897
3	lnc-MAP1LC3B2-2	chr12:116971771-116974016	XLOC_009897

No data

Variant related genes	Relation type
LINC00173	TF binding region
ENSG00000171471	Chromatin interaction
ENSG00000123066	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16946926	1.00[JPT][hapmap]
rs1732325	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899540	chr12:116920503-116999861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116972200-116975600	Weak transcription	Small Intestine	intestine
2	chr12:116972400-116975000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:116972400-116978400	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:116972600-116973400	Enhancers	Primary B cells from cord blood	blood
5	chr12:116972600-116975000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:116972600-116976200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr12:116972600-116976600	Weak transcription	Right Atrium	heart
8	chr12:116972600-116976800	Weak transcription	Brain Substantia Nigra	brain
9	chr12:116972600-116976800	Weak transcription	HUVEC	blood vessel
10	chr12:116972600-116977400	Weak transcription	HSMM	muscle
11	chr12:116972600-116977600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:116972600-116977800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr12:116972800-116973400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:116972800-116973400	Enhancers	Fetal Stomach	stomach
15	chr12:116972800-116974000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:116972800-116974600	Weak transcription	Spleen	Spleen
17	chr12:116972800-116974800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr12:116972800-116974800	Enhancers	GM12878-XiMat	blood
19	chr12:116972800-116974800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr12:116972800-116975000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr12:116972800-116975000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr12:116972800-116975000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr12:116972800-116975000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr12:116972800-116975000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr12:116972800-116975000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:116972800-116975000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr12:116972800-116975000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr12:116972800-116975200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr12:116972800-116976200	Weak transcription	Adipose Nuclei	Adipose
30	chr12:116972800-116976400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr12:116972800-116976400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr12:116972800-116976400	Weak transcription	Esophagus	oesophagus
33	chr12:116972800-116976400	Weak transcription	Lung	lung
34	chr12:116972800-116976400	Weak transcription	Pancreas	Pancrea
35	chr12:116972800-116976400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr12:116972800-116976400	Weak transcription	HMEC	breast
37	chr12:116972800-116976600	Weak transcription	Left Ventricle	heart
38	chr12:116972800-116976800	Weak transcription	Hela-S3	cervix
39	chr12:116972800-116977000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr12:116972800-116977000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr12:116972800-116977200	Weak transcription	Liver	Liver
42	chr12:116972800-116977200	Weak transcription	Brain Hippocampus Middle	brain
43	chr12:116972800-116977200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr12:116972800-116977200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:116972800-116977200	Weak transcription	Fetal Lung	lung
46	chr12:116972800-116977200	Weak transcription	Psoas Muscle	Psoas
47	chr12:116972800-116977600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr12:116972800-116977600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr12:116972800-116977600	Weak transcription	Right Ventricle	heart
50	chr12:116972800-116977800	Weak transcription	Brain Cingulate Gyrus	brain

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