Variant report

Variant	rs35840064
Chromosome Location	chr3:111498964-111498965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10934104	0.83[AMR][1000 genomes]
rs11709591	0.83[AMR][1000 genomes]
rs12638437	0.83[AMR][1000 genomes]
rs1398749	1.00[ASN][1000 genomes]
rs1398752	0.83[AMR][1000 genomes]
rs1398755	0.83[AMR][1000 genomes]
rs1513332	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1513333	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35894167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234402	1.00[ASN][1000 genomes]
rs4682062	1.00[ASN][1000 genomes]
rs4682297	0.83[AMR][1000 genomes]
rs4682300	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4682301	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57628489	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60556634	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768082	0.83[AMR][1000 genomes]
rs6791600	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800228	0.83[AMR][1000 genomes]
rs7427989	0.83[AMR][1000 genomes]
rs7620801	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7636559	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7640416	0.83[AMR][1000 genomes]
rs7642808	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7643067	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648126	0.83[AMR][1000 genomes]
rs7650348	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653881	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111488000-111501400	Weak transcription	Psoas Muscle	Psoas
3	chr3:111489400-111500600	Weak transcription	Fetal Lung	lung
4	chr3:111493400-111500800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:111495200-111500200	Weak transcription	Stomach Mucosa	stomach
6	chr3:111495800-111499000	Weak transcription	HMEC	breast
7	chr3:111496000-111499400	Weak transcription	HepG2	liver
8	chr3:111496000-111514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:111496200-111500600	Weak transcription	A549	lung
10	chr3:111496400-111501200	Weak transcription	Fetal Intestine Large	intestine
11	chr3:111497200-111500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:111497400-111499200	Strong transcription	Liver	Liver
13	chr3:111497400-111501400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:111497800-111500200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:111498600-111499000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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