Variant report

Variant	rs35842118
Chromosome Location	chr7:129139425-129139426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:129139030-129139429	A549	lung:	n/a	n/a
2	ZNF384	chr7:129139164-129139447	GM12878	blood:	n/a	n/a
3	CTCF	chr7:129139243-129139433	K562	blood:	n/a	n/a
4	ZNF384	chr7:129139108-129139483	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129138671..129141978-chr7:129250078..129253028,4	K562	blood:
2	chr7:129139139..129142160-chr7:129272114..129275915,3	MCF-7	breast:
3	chr7:129139279..129144298-chr7:129248057..129253593,12	MCF-7	breast:
4	chr7:129133780..129136057-chr7:129138129..129140676,2	K562	blood:
5	chr7:129135442..129139497-chr7:129141151..129144723,4	K562	blood:

No data

No data

No data

Variant related genes	Relation type
SMKR1	TF binding region
ENSG00000273329	Chromatin interaction
ENSG00000106459	Chromatin interaction
ENSG00000240204	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs639605	0.85[AFR][1000 genomes]
rs691332	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129103000-129141200	Weak transcription	Hela-S3	cervix
2	chr7:129104200-129141600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:129122000-129141800	Weak transcription	Right Ventricle	heart
4	chr7:129129400-129141800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:129129600-129141000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:129133600-129141600	Weak transcription	Primary T cells from cord blood	blood
7	chr7:129134000-129141600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:129134400-129139600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:129134400-129141400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:129135400-129139800	Weak transcription	GM12878-XiMat	blood
11	chr7:129136200-129141400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:129136200-129141600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:129137400-129139600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:129137400-129141800	Weak transcription	Right Atrium	heart
15	chr7:129137400-129141800	Weak transcription	Spleen	Spleen
16	chr7:129137800-129141600	Weak transcription	Placenta	Placenta
17	chr7:129138200-129139800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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