Variant report

Variant	rs35843159
Chromosome Location	chr12:118534760-118534761
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:118533326..118537455-chr12:118538415..118542334,4	K562	blood:

Variant related genes	Relation type
ENSG00000176834	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34898170	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35904952	0.83[ASN][1000 genomes]
rs3924358	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053785	chr12:118490955-118874194	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv560389	chr12:118502467-118564087	Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv899546	chr12:118515230-118563982	Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118500600-118535200	Weak transcription	Brain Substantia Nigra	brain
2	chr12:118500800-118539600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:118500800-118539800	Weak transcription	Right Ventricle	heart
4	chr12:118500800-118540800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:118501000-118539600	Weak transcription	Psoas Muscle	Psoas
6	chr12:118501000-118540200	Weak transcription	HUVEC	blood vessel
7	chr12:118501000-118540800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:118501000-118540800	Weak transcription	NH-A	brain
9	chr12:118501200-118536000	Weak transcription	Right Atrium	heart
10	chr12:118501200-118540400	Weak transcription	Brain Germinal Matrix	brain
11	chr12:118501200-118540800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:118501200-118541000	Weak transcription	Aorta	Aorta
13	chr12:118501600-118540400	Weak transcription	NHLF	lung
14	chr12:118502200-118540800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:118502200-118540800	Weak transcription	Brain Anterior Caudate	brain
16	chr12:118502600-118536200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:118509000-118538400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr12:118511800-118539600	Weak transcription	Pancreas	Pancrea
19	chr12:118514600-118540400	Weak transcription	Fetal Heart	heart
20	chr12:118515800-118540800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:118515800-118540800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr12:118516000-118539800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:118517400-118535600	Weak transcription	Colonic Mucosa	Colon
24	chr12:118517600-118535800	Weak transcription	Placenta	Placenta
25	chr12:118517600-118540000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr12:118517600-118540800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:118517600-118540800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr12:118518600-118540000	Weak transcription	Fetal Muscle Leg	muscle
29	chr12:118518600-118540800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr12:118519000-118540400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:118519000-118540800	Weak transcription	Colon Smooth Muscle	Colon
32	chr12:118519200-118539800	Weak transcription	Left Ventricle	heart
33	chr12:118519400-118540600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr12:118519600-118536000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr12:118519600-118540200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr12:118520200-118535800	Weak transcription	HepG2	liver
37	chr12:118520200-118536800	Weak transcription	Esophagus	oesophagus
38	chr12:118520200-118540600	Weak transcription	Liver	Liver
39	chr12:118522600-118535800	Weak transcription	Stomach Mucosa	stomach
40	chr12:118526200-118535600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr12:118526800-118536400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr12:118527000-118536800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr12:118527400-118535800	Weak transcription	Small Intestine	intestine
44	chr12:118527600-118535800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr12:118527600-118536400	Weak transcription	NHEK	skin
46	chr12:118527800-118535600	Weak transcription	Fetal Intestine Large	intestine
47	chr12:118527800-118535800	Weak transcription	A549	lung
48	chr12:118528000-118540400	Weak transcription	Dnd41	blood
49	chr12:118528800-118536200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr12:118528800-118536200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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