Variant report

Variant	rs35844778
Chromosome Location	chr19:19703656-19703657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19702026..19704512-chr19:19777801..19779336,2	MCF-7	breast:
2	chr19:19699647..19703848-chr19:19728208..19731865,4	MCF-7	breast:
3	chr19:19701585..19704571-chr19:19749702..19751858,2	K562	blood:
4	chr19:19699149..19708161-chr19:19735507..19742255,11	MCF-7	breast:
5	chr19:19702415..19703999-chr19:19742408..19743931,2	MCF-7	breast:
6	chr19:19701845..19703912-chr19:19706648..19708750,2	K562	blood:
7	chr19:19703007..19704852-chr19:19716995..19718509,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259242	Chromatin interaction
ENSG00000064547	Chromatin interaction
ENSG00000105717	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16982921	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3794992	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv518076	chr19:19692579-19715794	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19672000-19704800	Weak transcription	Brain Angular Gyrus	brain
2	chr19:19698800-19708400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr19:19700600-19708600	Strong transcription	Thymus	Thymus
4	chr19:19700800-19704000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:19701400-19703800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr19:19701600-19703800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:19701600-19703800	Enhancers	Fetal Muscle Trunk	muscle
8	chr19:19702400-19704000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr19:19702400-19706000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr19:19702400-19713200	Weak transcription	Brain Anterior Caudate	brain
11	chr19:19702600-19703800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr19:19702600-19703800	Weak transcription	Fetal Thymus	thymus
13	chr19:19702600-19704400	Weak transcription	HSMMtube	muscle
14	chr19:19702600-19704600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr19:19702600-19704800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr19:19702600-19704800	Weak transcription	Brain Hippocampus Middle	brain
17	chr19:19702600-19705200	Weak transcription	Placenta	Placenta
18	chr19:19702600-19705200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr19:19702600-19705400	Weak transcription	Osteobl	bone
20	chr19:19702600-19705800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr19:19702600-19705800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr19:19702600-19705800	Weak transcription	Colonic Mucosa	Colon
23	chr19:19702600-19705800	Weak transcription	Esophagus	oesophagus
24	chr19:19702600-19705800	Weak transcription	Gastric	stomach
25	chr19:19702600-19706000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr19:19702600-19706000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr19:19702600-19706000	Weak transcription	A549	lung
28	chr19:19702600-19706000	Weak transcription	HSMM	muscle
29	chr19:19702600-19707200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:19702600-19707400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr19:19702600-19708400	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr19:19702600-19708600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr19:19702600-19709000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr19:19702600-19712400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr19:19702600-19713200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr19:19702600-19713400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr19:19702600-19713400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr19:19702600-19713600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr19:19702600-19719400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:19702800-19703800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:19702800-19705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr19:19702800-19705200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr19:19702800-19705200	Weak transcription	Stomach Mucosa	stomach
44	chr19:19702800-19705200	Weak transcription	NHEK	skin
45	chr19:19702800-19705400	Weak transcription	Lung	lung
46	chr19:19702800-19705800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr19:19702800-19706000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr19:19702800-19706200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr19:19702800-19706400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr19:19702800-19707400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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