Variant report

Variant	rs35846274
Chromosome Location	chr12:65047533-65047534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:65046317..65048148-chr12:65063094..65065248,2	K562	blood:
2	chr12:65047034..65048625-chr12:65050187..65053133,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12812333	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12815802	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12820666	0.87[EUR][1000 genomes]
rs12828259	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35011112	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35127263	0.87[EUR][1000 genomes]
rs4964087	0.85[ASN][1000 genomes]
rs55668439	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56136505	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56206108	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61931658	0.82[EUR][1000 genomes]
rs67264294	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9788201	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832444	chr12:64981484-65168472	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv559203	chr12:65002969-65199922	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1045216	chr12:65009102-65176894	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv541513	chr12:65009102-65176894	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv469457	chr12:65009243-65195977	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv559204	chr12:65009243-65195977	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:65025000-65059600	Weak transcription	Thymus	Thymus
2	chr12:65027800-65047600	Weak transcription	Psoas Muscle	Psoas
3	chr12:65028600-65056400	Weak transcription	NHEK	skin
4	chr12:65031000-65047600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:65033000-65052600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:65033600-65059400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:65038200-65051200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:65041400-65048200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:65041400-65050400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr12:65041600-65047800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:65041600-65052200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:65041800-65047800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:65043200-65048000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr12:65043400-65047800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr12:65043400-65047800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr12:65043400-65048200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr12:65043600-65047800	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr12:65043600-65059600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr12:65044000-65048600	Weak transcription	HepG2	liver
20	chr12:65044000-65059400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr12:65044200-65047600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr12:65044200-65047800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr12:65044200-65048600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr12:65044200-65051400	Weak transcription	Colonic Mucosa	Colon
25	chr12:65044600-65051000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:65044800-65047600	Weak transcription	Adipose Nuclei	Adipose
27	chr12:65044800-65050200	Weak transcription	Fetal Muscle Leg	muscle
28	chr12:65044800-65050400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr12:65045000-65051000	Weak transcription	GM12878-XiMat	blood
30	chr12:65045200-65047800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr12:65045200-65047800	Enhancers	A549	lung
32	chr12:65045200-65048200	Enhancers	Fetal Heart	heart
33	chr12:65045200-65048600	Weak transcription	Fetal Intestine Large	intestine
34	chr12:65045200-65048800	Weak transcription	Fetal Intestine Small	intestine
35	chr12:65045200-65050200	Enhancers	Primary T cells from cord blood	blood
36	chr12:65045400-65048000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr12:65045400-65049000	Weak transcription	Primary B cells from cord blood	blood
38	chr12:65045600-65047600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr12:65045600-65048800	Weak transcription	Small Intestine	intestine
40	chr12:65045600-65054600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr12:65045800-65051000	Weak transcription	Gastric	stomach
42	chr12:65045800-65056400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr12:65046400-65047800	Enhancers	Primary B cells from peripheral blood	blood
44	chr12:65046400-65048800	Weak transcription	Stomach Mucosa	stomach
45	chr12:65046400-65049000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr12:65046400-65050200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr12:65046400-65058600	Weak transcription	Ovary	ovary
48	chr12:65046600-65048400	Enhancers	Left Ventricle	heart
49	chr12:65046600-65050200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr12:65046600-65051800	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links