Variant report

Variant	rs35848123
Chromosome Location	chr7:18549654-18549655
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2582410	chr7:18549311-18550684	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18541800-18551600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:18542000-18553200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:18543000-18554400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:18545600-18554200	Weak transcription	Fetal Brain Female	brain
5	chr7:18546000-18551000	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:18546200-18551800	Enhancers	Primary B cells from cord blood	blood
7	chr7:18548000-18550200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:18548000-18551000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:18548200-18549800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr7:18548200-18549800	Flanking Active TSS	Osteobl	bone
11	chr7:18548200-18550800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:18548400-18551000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:18548600-18550400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:18548600-18551200	Active TSS	NHEK	skin
15	chr7:18548600-18551400	Active TSS	Aorta	Aorta
16	chr7:18548600-18551400	Active TSS	HMEC	breast
17	chr7:18548600-18551400	Active TSS	NH-A	brain
18	chr7:18548800-18549800	Flanking Active TSS	NHLF	lung
19	chr7:18548800-18550000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:18548800-18550000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:18548800-18550000	Active TSS	Right Atrium	heart
22	chr7:18548800-18550400	Active TSS	NHDF-Ad	bronchial
23	chr7:18548800-18550600	Active TSS	HSMMtube	muscle
24	chr7:18549000-18549800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr7:18549000-18550800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:18549000-18551000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:18549000-18554400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:18549000-18557000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:18549000-18557400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:18549000-18560000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr7:18549000-18561600	Weak transcription	Brain Substantia Nigra	brain
32	chr7:18549200-18550000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:18549200-18550600	Enhancers	Fetal Heart	heart
34	chr7:18549200-18551400	Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr7:18549200-18553000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr7:18549200-18553000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:18549200-18553000	Weak transcription	Left Ventricle	heart
38	chr7:18549200-18560200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:18549400-18550000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr7:18549400-18550400	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr7:18549400-18552400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr7:18549400-18553000	Weak transcription	Psoas Muscle	Psoas
43	chr7:18549400-18554400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:18549600-18549800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:18549600-18549800	Flanking Active TSS	HUVEC	blood vessel
46	chr7:18549600-18550000	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr7:18549600-18550000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:18549600-18550200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:18549600-18550200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr7:18549600-18550800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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