Variant report

Variant	rs35850995
Chromosome Location	chr11:75239389-75239390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:75238924-75239410	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75109301..75113092-chr11:75238838..75241388,3	MCF-7	breast:
2	chr11:75137530..75143776-chr11:75234822..75239544,9	MCF-7	breast:
3	chr11:75222954..75225318-chr11:75238533..75240384,2	K562	blood:
4	chr11:75094569..75097338-chr11:75239172..75241375,2	K562	blood:
5	chr11:75105345..75108167-chr11:75238788..75240390,2	K562	blood:
6	chr11:75237299..75240439-chr11:75240867..75243986,5	MCF-7	breast:
7	chr11:75155406..75158188-chr11:75239251..75241040,2	MCF-7	breast:
8	chr11:75232287..75234755-chr11:75237989..75239575,2	MCF-7	breast:

No data

Variant related genes	Relation type
GDPD5	TF binding region
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000149243	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12417071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35477669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35850995	GDPD5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75236600-75239800	Weak transcription	Fetal Heart	heart
2	chr11:75237600-75243400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:75237600-75245800	Weak transcription	Right Ventricle	heart
4	chr11:75237800-75239600	Weak transcription	Fetal Kidney	kidney
5	chr11:75237800-75242600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:75237800-75243200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:75237800-75243200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:75237800-75243200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:75237800-75243200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:75237800-75243200	Weak transcription	Hela-S3	cervix
11	chr11:75237800-75243200	Weak transcription	HUVEC	blood vessel
12	chr11:75237800-75243400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:75237800-75243600	Enhancers	HepG2	liver
14	chr11:75237800-75245000	Weak transcription	Adipose Nuclei	Adipose
15	chr11:75237800-75245400	Weak transcription	Fetal Lung	lung
16	chr11:75237800-75258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:75238000-75239400	Weak transcription	Fetal Intestine Large	intestine
18	chr11:75238000-75239800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:75238000-75240000	Weak transcription	Spleen	Spleen
20	chr11:75238000-75240600	Weak transcription	K562	blood
21	chr11:75238000-75242400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:75238000-75242600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:75238000-75242600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:75238000-75243000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:75238000-75243000	Weak transcription	A549	lung
26	chr11:75238000-75243200	Weak transcription	Primary T cells from cord blood	blood
27	chr11:75238000-75243200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:75238000-75243200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:75238000-75243200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:75238000-75243200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:75238000-75243200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:75238000-75243200	Weak transcription	Fetal Intestine Small	intestine
33	chr11:75238000-75245000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:75238000-75245400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:75238000-75248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:75238200-75239800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:75238200-75240200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:75238200-75240400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:75238800-75239600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:75239000-75239400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:75239000-75240000	Enhancers	Placenta	Placenta
42	chr11:75239200-75239600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:75239200-75240000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:75239200-75240200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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