Variant report

Variant	rs35851954
Chromosome Location	chr1:11045724-11045725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:11045723-11047060	GM12878	blood:	n/a	chr1:11045997-11046006 chr1:11045984-11045998 chr1:11045907-11045917 chr1:11046272-11046286
2	EP300	chr1:11045714-11047036	GM12878	blood:	n/a	chr1:11045997-11046006 chr1:11045984-11045998 chr1:11045907-11045917 chr1:11046272-11046286
3	CREB1	chr1:11045615-11046363	GM12878	blood:	n/a	n/a
4	TCF12	chr1:11045640-11046232	GM12878	blood:	n/a	n/a
5	IRF4	chr1:11045587-11046306	GM12878	blood:	n/a	n/a
6	MTA3	chr1:11045567-11046352	GM12878	blood:	n/a	n/a
7	IKZF1	chr1:11045367-11047035	GM12878	blood:	n/a	chr1:11046284-11046296 chr1:11046285-11046293
8	BHLHE40	chr1:11045623-11046998	GM12878	blood:	n/a	n/a
9	YY1	chr1:11045710-11046277	GM12878	blood:	n/a	n/a
10	TCF3	chr1:11045724-11046214	GM12878	blood:	n/a	n/a
11	EBF1	chr1:11045662-11046203	GM12878	blood:	n/a	n/a
12	RUNX3	chr1:11045579-11047093	GM12878	blood:	n/a	n/a
13	SP1	chr1:11045665-11046327	GM12878	blood:	n/a	n/a
14	SPI1	chr1:11045689-11046294	GM12891	blood:	n/a	chr1:11046001-11046010
15	NFIC	chr1:11045530-11047088	GM12878	blood:	n/a	n/a
16	POLR2A	chr1:11045671-11046005	GM12891	blood:	n/a	n/a
17	POLR2A	chr1:11045514-11046357	GM12878	blood:	n/a	n/a
18	NFIC	chr1:11045493-11046386	GM12878	blood:	n/a	n/a
19	RELA	chr1:11045588-11046229	GM15510	blood:	n/a	n/a
20	POU2F2	chr1:11045599-11046343	GM12878	blood:	n/a	n/a
21	POLR2A	chr1:11045531-11046373	GM12878	blood:	n/a	n/a
22	STAT5A	chr1:11045646-11046285	GM12878	blood:	n/a	chr1:11045805-11045813
23	FOXM1	chr1:11045538-11046470	GM12878	blood:	n/a	n/a
24	PML	chr1:11045620-11046481	GM12878	blood:	n/a	chr1:11046230-11046238
25	RELA	chr1:11045623-11047000	GM18505	blood:	n/a	n/a
26	RELA	chr1:11045690-11046869	GM19193	blood:	n/a	n/a
27	EBF1	chr1:11045626-11046270	GM12878	blood:	n/a	n/a
28	POLR2A	chr1:11045584-11046106	GM12892	blood:	n/a	n/a
29	TCF3	chr1:11045660-11046218	GM12878	blood:	n/a	n/a
30	RCOR1	chr1:11045643-11046265	GM12878	blood:	n/a	n/a
31	BATF	chr1:11045629-11046237	GM12878	blood:	n/a	n/a
32	ZNF384	chr1:11045655-11046665	GM12878	blood:	n/a	n/a
33	SPI1	chr1:11045475-11046400	GM12878	blood:	n/a	chr1:11046001-11046010
34	RUNX3	chr1:11045569-11046521	GM12878	blood:	n/a	n/a
35	ATF2	chr1:11045602-11046388	GM12878	blood:	n/a	n/a
36	SPI1	chr1:11045679-11046230	GM12891	blood:	n/a	chr1:11046001-11046010
37	WRNIP1	chr1:11045693-11046172	GM12878	blood:	n/a	n/a
38	BCL11A	chr1:11045666-11046328	GM12878	blood:	n/a	n/a
39	POLR2A	chr1:11045722-11046307	GM12891	blood:	n/a	n/a
40	FOXM1	chr1:11045683-11046449	GM12878	blood:	n/a	n/a
41	BCLAF1	chr1:11045564-11046402	GM12878	blood:	n/a	n/a
42	NFATC1	chr1:11045514-11046369	GM12878	blood:	n/a	n/a
43	MTA3	chr1:11045488-11047108	GM12878	blood:	n/a	n/a
44	CEBPB	chr1:11045513-11046428	GM12878	blood:	n/a	n/a
45	RELA	chr1:11045599-11046987	GM12878	blood:	n/a	n/a
46	PAX5	chr1:11045623-11046940	GM12878	blood:	n/a	n/a
47	ATF2	chr1:11045556-11046922	GM12878	blood:	n/a	n/a
48	TBL1XR1	chr1:11045650-11047091	GM12878	blood:	n/a	n/a
49	NFATC1	chr1:11045655-11046369	GM12878	blood:	n/a	n/a
50	PAX5	chr1:11045681-11046249	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:11020538..11022559-chr1:11043478..11045747,2	K562	blood:

Variant related genes	Relation type
C1orf127	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12739664	1.00[AFR][1000 genomes]
rs34864652	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv1825837	chr1:10887923-11093741	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv832425	chr1:10903845-11122975	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	esv3366034	chr1:11031114-11228113	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35851954	CUL3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:11041200-11050600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:11041800-11046400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:11042000-11045800	Weak transcription	Pancreas	Pancrea
4	chr1:11042400-11050000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:11043600-11046600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:11045600-11046000	Enhancers	Fetal Thymus	thymus
7	chr1:11045600-11046200	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:11045600-11047000	Flanking Active TSS	GM12878-XiMat	blood

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