Variant report

Variant	rs35854118
Chromosome Location	chr19:19375371-19375372
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:19374128..19376226-chr19:19377973..19380781,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10401714	0.94[EUR][1000 genomes]
rs10403273	0.96[EUR][1000 genomes]
rs10407933	0.94[EUR][1000 genomes]
rs10422893	0.95[EUR][1000 genomes]
rs10423874	0.94[EUR][1000 genomes]
rs1064395	0.94[EUR][1000 genomes]
rs11555053	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1557723	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17216041	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17751061	0.93[EUR][1000 genomes]
rs1989867	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2010506	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011503	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2074302	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2315023	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2965190	0.82[EUR][1000 genomes]
rs4239639	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4808932	0.94[EUR][1000 genomes]
rs4808933	0.94[EUR][1000 genomes]
rs4808934	0.93[EUR][1000 genomes]
rs4808944	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55762233	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55765017	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55822665	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56044734	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56135441	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56144632	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56212061	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56278919	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57436187	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6511027	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7257875	0.95[EUR][1000 genomes]
rs72999030	0.94[EUR][1000 genomes]
rs72999059	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72999063	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72999068	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs756999	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8100097	0.86[EUR][1000 genomes]
rs8108777	0.94[EUR][1000 genomes]
rs998732	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv911304	chr19:19303802-19408164	Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv911306	chr19:19366643-19391838	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19373000-19384000	Weak transcription	Pancreas	Pancrea
2	chr19:19374000-19383400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:19374000-19383400	Weak transcription	Right Atrium	heart
4	chr19:19374200-19376600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:19374200-19383600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:19374400-19381400	Strong transcription	Duodenum Mucosa	Duodenum
7	chr19:19374400-19383200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr19:19374800-19381800	Strong transcription	Fetal Intestine Small	intestine
9	chr19:19374800-19383200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr19:19375000-19378800	Strong transcription	Liver	Liver
11	chr19:19375200-19375400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr19:19375200-19375400	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links