Variant report

Variant	rs35854858
Chromosome Location	chr6:37536925-37536926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37536709..37539290-chr6:37640782..37642683,2	MCF-7	breast:
2	chr6:37536776..37539580-chr6:37592890..37596522,3	MCF-7	breast:
3	chr6:37451478..37453334-chr6:37536422..37539056,2	MCF-7	breast:
4	chr6:37533306..37535085-chr6:37536114..37538057,2	K562	blood:
5	chr6:37536721..37538637-chr6:37643593..37645341,2	K562	blood:
6	chr6:37391304..37393328-chr6:37535749..37538149,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL353597.1-5	chr6:37535492-37539236	NONHSAT112275

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34017770	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv522098	chr6:37532103-37545923	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522466	chr6:37532103-37545923	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2762587	chr6:37535730-37545923	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37534200-37537200	Weak transcription	Ovary	ovary
2	chr6:37534200-37537600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:37534200-37556600	Weak transcription	Right Atrium	heart
4	chr6:37534400-37537400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:37534600-37537600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:37535200-37537600	Weak transcription	Brain Germinal Matrix	brain
7	chr6:37535600-37537400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37535600-37537400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:37535800-37537400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:37536000-37537800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:37536000-37538000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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