Variant report

Variant	rs35855456
Chromosome Location	chr14:37055565-37055566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:37054360..37056420-chr14:37058461..37060514,2	K562	blood:
2	chr14:37053930..37056415-chr14:37057863..37059369,2	MCF-7	breast:
3	chr14:37050197..37052388-chr14:37053884..37055882,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136327	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047867	0.82[ASN][1000 genomes]
rs10047954	0.82[ASN][1000 genomes]
rs10145174	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10148530	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10483473	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11623436	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11624322	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11624339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624376	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11624740	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11629237	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12878375	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12893651	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17104686	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17104788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1951165	0.82[ASN][1000 genomes]
rs1951166	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2899853	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35669843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35770599	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4300555	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4903224	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs5023326	0.90[AFR][1000 genomes]
rs55787458	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7159131	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv917279	chr14:36953511-37146655	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv949612	chr14:36996206-37121633	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35855456	NKX2-8	cis	Esophagus Mucosa	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37055200-37055600	Bivalent Enhancer	Fetal Lung	lung
2	chr14:37055400-37055800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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