Variant report

Variant	rs35861079
Chromosome Location	chr4:151138599-151138600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:150920364..150921270-chr4:151137842..151139045,6	MCF-7	breast:
2	chr4:150931162..150932721-chr4:151138128..151139077,5	MCF-7	breast:
3	chr4:150931406..150931914-chr4:151138191..151139101,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10015813	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1002006	0.87[AMR][1000 genomes]
rs10471053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17631799	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17631959	0.87[AMR][1000 genomes]
rs17631971	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17688421	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2004467	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2054271	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2305979	0.81[EUR][1000 genomes]
rs2359940	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28713632	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4696635	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73858508	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs922121	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs922122	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9999860	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151114200-151154200	Weak transcription	Aorta	Aorta
2	chr4:151130600-151156000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:151132600-151143200	Weak transcription	Fetal Stomach	stomach
4	chr4:151132800-151150400	Weak transcription	Pancreas	Pancrea
5	chr4:151133200-151145600	Weak transcription	HSMMtube	muscle
6	chr4:151133200-151150400	Weak transcription	Right Ventricle	heart
7	chr4:151133400-151150400	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:151133800-151141000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:151134600-151141600	Weak transcription	HSMM	muscle
10	chr4:151135400-151139600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:151136400-151138800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:151136400-151139800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:151136400-151140000	Enhancers	Fetal Heart	heart
14	chr4:151136400-151141600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:151136400-151142200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:151136600-151140000	Enhancers	A549	lung
17	chr4:151137000-151146000	Weak transcription	Left Ventricle	heart
18	chr4:151137600-151139600	Enhancers	Fetal Brain Male	brain
19	chr4:151137600-151139800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:151137800-151139000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:151137800-151139600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:151137800-151139600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:151137800-151139800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:151137800-151139800	Enhancers	Brain Anterior Caudate	brain
25	chr4:151138000-151138600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr4:151138000-151138600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:151138000-151138600	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr4:151138000-151138800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:151138000-151138800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr4:151138000-151138800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:151138000-151138800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:151138000-151138800	Flanking Active TSS	Brain Germinal Matrix	brain
33	chr4:151138000-151138800	Enhancers	Colon Smooth Muscle	Colon
34	chr4:151138000-151138800	Enhancers	Fetal Kidney	kidney
35	chr4:151138000-151138800	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr4:151138000-151138800	Enhancers	NH-A	brain
37	chr4:151138000-151138800	Enhancers	NHDF-Ad	bronchial
38	chr4:151138000-151139000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:151138000-151139000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:151138000-151139000	Enhancers	Osteobl	bone
41	chr4:151138000-151139600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr4:151138000-151139600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr4:151138000-151139800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr4:151138000-151140000	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr4:151138200-151138600	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr4:151138200-151138800	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr4:151138200-151138800	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr4:151138200-151139000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:151138200-151139000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:151138200-151139000	Enhancers	Muscle Satellite Cultured Cells	--

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