Variant report

Variant	rs35863219
Chromosome Location	chr2:184985091-184985092
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10803972	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12475408	0.85[ASN][1000 genomes]
rs12993181	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12994095	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12997494	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13000242	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13017956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13025532	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13028827	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13033991	0.85[ASN][1000 genomes]
rs1405192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1455881	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1526208	0.84[ASN][1000 genomes]
rs1526209	0.82[ASN][1000 genomes]
rs1526210	0.85[ASN][1000 genomes]
rs16825631	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16825649	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17615918	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17615972	0.99[ASN][1000 genomes]
rs1852288	0.85[ASN][1000 genomes]
rs2369208	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2369210	0.85[ASN][1000 genomes]
rs34244915	0.85[ASN][1000 genomes]
rs34378900	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34585395	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34596322	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34892768	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34947840	0.85[ASN][1000 genomes]
rs35267098	0.85[ASN][1000 genomes]
rs35501929	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35684494	0.98[ASN][1000 genomes]
rs35808438	0.86[ASN][1000 genomes]
rs36000756	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs36013983	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs36118547	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4355073	0.85[ASN][1000 genomes]
rs4455125	0.86[ASN][1000 genomes]
rs6705672	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6722521	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7602683	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv997475	chr2:184828307-184993186	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834482	chr2:184939548-185066635	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv998904	chr2:184955270-185318483	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1012174	chr2:184956114-185316664	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv875488	chr2:184975795-185091908	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184979200-184986800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:184984400-184985200	Enhancers	Fetal Brain Male	brain
3	chr2:184984800-184985200	Enhancers	Colon Smooth Muscle	Colon
4	chr2:184984800-184985600	Enhancers	Fetal Stomach	stomach

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