Variant report

Variant	rs35868647
Chromosome Location	chr2:151917451-151917452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:151340528..151343485-chr2:151915081..151917487,2	MCF-7	breast:
2	chr2:151911293..151912869-chr2:151915243..151918186,2	K562	blood:
3	chr2:151913690..151917592-chr2:151920463..151923013,3	K562	blood:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12989503	1.00[AMR][1000 genomes]
rs12990096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12997492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13009048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13010851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13014189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13026983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13035255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16823204	1.00[AFR][1000 genomes]
rs16829612	1.00[AFR][1000 genomes]
rs16829613	1.00[AFR][1000 genomes]
rs16829671	1.00[AFR][1000 genomes]
rs16829674	1.00[AFR][1000 genomes]
rs16829680	1.00[AFR][1000 genomes]
rs16829682	1.00[AFR][1000 genomes]
rs16829715	1.00[AFR][1000 genomes]
rs16829723	1.00[AFR][1000 genomes]
rs16829752	1.00[AFR][1000 genomes]
rs34221803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34238735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34557584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34573599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34677748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34873254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35052859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35110064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35451836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35555169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35643506	0.90[AMR][1000 genomes]
rs35691151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35758708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36104725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61637122	1.00[AFR][1000 genomes]
rs71208329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71415117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71415118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71415119	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71415121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71415122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151910400-151919400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:151910600-151919400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:151913000-151919400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:151914400-151919600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:151914400-151919600	Weak transcription	NHDF-Ad	bronchial
6	chr2:151916000-151918000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:151916600-151918400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:151917000-151918000	Enhancers	Osteobl	bone
9	chr2:151917200-151918000	Enhancers	NHEK	skin
10	chr2:151917400-151917800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:151917400-151919600	Weak transcription	HMEC	breast

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