Variant report

Variant	rs35870186
Chromosome Location	chr20:23620800-23620801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr20:23620543-23621471	HepG2	liver:	n/a	n/a
2	EP300	chr20:23620648-23621195	HepG2	liver:	n/a	n/a
3	NFIC	chr20:23620657-23621033	HepG2	liver:	n/a	n/a
4	TEAD4	chr20:23620696-23621274	HepG2	liver:	n/a	chr20:23621013-23621022
5	RFX5	chr20:23620677-23620966	HepG2	liver:	n/a	n/a
6	MBD4	chr20:23620047-23621074	HepG2	liver:	n/a	n/a
7	POLR2A	chr20:23620673-23621211	HepG2	liver:	n/a	n/a
8	HNF4A	chr20:23620732-23621066	HepG2	liver:	n/a	chr20:23620973-23620988
9	HDAC2	chr20:23620577-23621181	HepG2	liver:	n/a	n/a
10	POLR2A	chr20:23620745-23621195	HepG2	liver:	n/a	n/a
11	HEY1	chr20:23620740-23622184	HepG2	liver:	n/a	n/a
12	TBP	chr20:23620708-23621053	HepG2	liver:	n/a	n/a
13	MYBL2	chr20:23620530-23622392	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr20:23615698..23619686-chr20:23620113..23624171,4	MCF-7	breast:
2	chr20:23616967..23620200-chr20:23620235..23623406,7	MCF-7	breast:
3	chr20:23619975..23621824-chr20:23630879..23635181,3	MCF-7	breast:

Variant related genes	Relation type
CST3	TF binding region
ENSG00000101439	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13041281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13045496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34216238	1.00[AMR][1000 genomes]
rs35632085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73610707	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv964381	chr20:23614805-23621846	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23618600-23620800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr20:23618600-23621000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:23618600-23621200	Weak transcription	Ovary	ovary
4	chr20:23618600-23621200	Weak transcription	GM12878-XiMat	blood
5	chr20:23618600-23621600	Weak transcription	Liver	Liver
6	chr20:23618600-23621600	Weak transcription	Brain Hippocampus Middle	brain
7	chr20:23618600-23621800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr20:23618600-23621800	Weak transcription	Left Ventricle	heart
9	chr20:23618600-23622000	Weak transcription	HUVEC	blood vessel
10	chr20:23618600-23622200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr20:23618600-23622400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr20:23618600-23622400	Weak transcription	NHDF-Ad	bronchial
13	chr20:23618600-23622400	Weak transcription	NHLF	lung
14	chr20:23618600-23622600	Weak transcription	Brain Anterior Caudate	brain
15	chr20:23618600-23622600	Weak transcription	Brain Substantia Nigra	brain
16	chr20:23618600-23622600	Weak transcription	Colon Smooth Muscle	Colon
17	chr20:23618600-23624800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:23618600-23626000	Weak transcription	Gastric	stomach
19	chr20:23618800-23620800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr20:23618800-23621000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:23618800-23621200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr20:23618800-23621200	Weak transcription	Psoas Muscle	Psoas
23	chr20:23618800-23621400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr20:23618800-23621400	Weak transcription	Primary B cells from cord blood	blood
25	chr20:23618800-23621400	Weak transcription	HSMMtube	muscle
26	chr20:23618800-23621600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr20:23618800-23621600	Weak transcription	Pancreas	Pancrea
28	chr20:23618800-23621600	Weak transcription	HSMM	muscle
29	chr20:23618800-23621800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr20:23618800-23622000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr20:23618800-23622000	Enhancers	Placenta	Placenta
32	chr20:23618800-23622000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr20:23618800-23622200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr20:23618800-23622400	Weak transcription	Fetal Lung	lung
35	chr20:23618800-23622400	Weak transcription	Osteobl	bone
36	chr20:23618800-23622600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr20:23618800-23622600	Weak transcription	Right Atrium	heart
38	chr20:23618800-23623000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr20:23618800-23623000	Weak transcription	NH-A	brain
40	chr20:23618800-23625200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr20:23618800-23626400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr20:23618800-23628600	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr20:23619000-23620800	Weak transcription	Thymus	Thymus
44	chr20:23619000-23622400	Flanking Active TSS	HepG2	liver
45	chr20:23619200-23621600	Weak transcription	Lung	lung
46	chr20:23619200-23621800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr20:23619200-23621800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr20:23619200-23621800	Weak transcription	Right Ventricle	heart
49	chr20:23619200-23622000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr20:23619200-23622600	Weak transcription	H9 Cell Line	embryonic stem cell

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