Variant report

Variant	rs358715
Chromosome Location	chr3:155525798-155525799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr3:155525671-155525860	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155522731..155527439-chr3:155568712..155573851,7	MCF-7	breast:
2	chr3:155525612..155527691-chr3:155537327..155538828,2	K562	blood:
3	chr3:155524430..155525997-chr3:155545750..155547952,2	MCF-7	breast:
4	chr3:155524299..155526262-chr3:155527847..155530025,2	K562	blood:
5	chr3:155522036..155526613-chr3:155586597..155592084,8	K562	blood:

No data

Variant related genes	Relation type
C3orf33	TF binding region
ENSG00000163655	Chromatin interaction
ENSG00000169359	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs168586	0.81[CEU][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35245064	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs358716	0.83[EUR][1000 genomes]
rs358717	0.85[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4434110	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155524400-155527000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:155524400-155527000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:155524400-155527200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:155524400-155527400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:155524400-155542800	Weak transcription	Left Ventricle	heart
6	chr3:155524400-155543600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:155524400-155547000	Weak transcription	HSMMtube	muscle
8	chr3:155524400-155565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:155524400-155567400	Weak transcription	Lung	lung
10	chr3:155524400-155569400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:155524600-155527200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:155524600-155527400	Weak transcription	Osteobl	bone
13	chr3:155524600-155532800	Weak transcription	K562	blood
14	chr3:155524600-155544200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:155524600-155563400	Weak transcription	Brain Angular Gyrus	brain
16	chr3:155524600-155568000	Weak transcription	HUVEC	blood vessel
17	chr3:155525600-155525800	Enhancers	Colon Smooth Muscle	Colon
18	chr3:155525600-155526000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr3:155525600-155526000	Enhancers	Fetal Heart	heart
20	chr3:155525600-155526200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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