Variant report

Variant	rs35873507
Chromosome Location	chr2:153262378-153262379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153260728..153263432-chr2:153264025..153267575,5	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12991203	1.00[ASN][1000 genomes]
rs13015675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13016534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029667	1.00[ASN][1000 genomes]
rs13034458	1.00[ASN][1000 genomes]
rs13034520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34416306	1.00[ASN][1000 genomes]
rs34974542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35588394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35704894	1.00[EUR][1000 genomes]
rs71417222	1.00[EUR][1000 genomes]
rs71417223	1.00[ASN][1000 genomes]
rs71417224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1005012	chr2:153206764-153273886	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875291	chr2:153251742-153339823	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153246600-153266600	Enhancers	Brain Substantia Nigra	brain
2	chr2:153247400-153277600	Weak transcription	Fetal Intestine Small	intestine
3	chr2:153252000-153269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:153253200-153262800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:153253200-153263200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:153253200-153263400	Enhancers	Brain Hippocampus Middle	brain
7	chr2:153253200-153263800	Weak transcription	Fetal Brain Female	brain
8	chr2:153253200-153266400	Enhancers	Brain Cingulate Gyrus	brain
9	chr2:153253800-153262400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:153254000-153263400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:153257200-153263800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr2:153257600-153263200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:153257600-153266800	Enhancers	HepG2	liver
14	chr2:153257800-153264600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr2:153257800-153268200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:153258000-153263200	Weak transcription	Osteobl	bone
17	chr2:153258600-153263600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr2:153259000-153263600	Enhancers	Adipose Nuclei	Adipose
19	chr2:153259200-153266600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:153259200-153266600	Weak transcription	Right Ventricle	heart
21	chr2:153259600-153263800	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:153259600-153263800	Weak transcription	Spleen	Spleen
23	chr2:153259800-153262800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr2:153259800-153263800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:153260000-153262800	Weak transcription	Fetal Brain Male	brain
26	chr2:153260000-153263600	Weak transcription	Fetal Heart	heart
27	chr2:153260000-153263800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr2:153260200-153263600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:153260200-153264000	Weak transcription	Placenta	Placenta
30	chr2:153260200-153264600	Enhancers	Hela-S3	cervix
31	chr2:153260400-153262800	Weak transcription	Primary T cells from cord blood	blood
32	chr2:153260400-153262800	Weak transcription	Fetal Lung	lung
33	chr2:153260400-153263600	Weak transcription	Colonic Mucosa	Colon
34	chr2:153260400-153264000	Weak transcription	Fetal Thymus	thymus
35	chr2:153260800-153262400	Enhancers	Psoas Muscle	Psoas
36	chr2:153261000-153263400	Enhancers	NHEK	skin
37	chr2:153261000-153263600	Enhancers	Brain Anterior Caudate	brain
38	chr2:153261000-153264600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr2:153261200-153262600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:153261200-153263600	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr2:153261400-153262400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:153261400-153263000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr2:153261400-153263600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr2:153261400-153263600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr2:153261400-153263800	Weak transcription	Lung	lung
46	chr2:153261400-153264200	Enhancers	HMEC	breast
47	chr2:153261400-153264600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr2:153261400-153264600	Enhancers	Stomach Mucosa	stomach
49	chr2:153261400-153264600	Flanking Active TSS	A549	lung
50	chr2:153261400-153265000	Enhancers	Brain Angular Gyrus	brain

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