Variant report

Variant	rs35878446
Chromosome Location	chr12:120729718-120729719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:633)
CpG islands
(count:61)
Chromatin interactive
region (count:333)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:633 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:120729078-120731508	K562	blood:	n/a	n/a
2	BACH1	chr12:120728588-120730182	K562	blood:	n/a	n/a
3	TAF7	chr12:120728675-120731670	H1-hESC	embryonic stem cell:	n/a	n/a
4	JUND	chr12:120728718-120731221	A549	lung:	n/a	chr12:120729940-120729949 chr12:120729726-120729735
5	GATA2	chr12:120729204-120729803	K562	blood:	n/a	n/a
6	POLR2A	chr12:120729232-120730148	K562	blood:	n/a	n/a
7	USF1	chr12:120729259-120729753	SK-N-SH_RA	brain:	n/a	n/a
8	POLR2A	chr12:120728945-120730285	H1-neurons	neurons:	n/a	n/a
9	ATF3	chr12:120729040-120730251	A549	lung:	n/a	chr12:120729941-120729949 chr12:120729937-120729952 chr12:120729938-120729948 chr12:120729941-120729951 chr12:120729941-120729951 chr12:120729938-120729951 chr12:120729940-120729951 chr12:120729941-120729948 chr12:120729939-120729950 chr12:120729939-120729950 chr12:120729940-120729948
10	MAZ	chr12:120729125-120730273	K562	blood:	n/a	n/a
11	PBX3	chr12:120728877-120730280	SK-N-SH	brain:	n/a	chr12:120729422-120729433
12	POLR2A	chr12:120728692-120731184	GM12891	blood:	n/a	n/a
13	YY1	chr12:120729177-120730124	HCT-116	colon:	n/a	chr12:120729725-120729736
14	ELF1	chr12:120729439-120730325	GM12878	blood:	n/a	n/a
15	ZBTB33	chr12:120729109-120729957	HCT-116	colon:	n/a	n/a
16	ETS1	chr12:120728576-120730203	A549	lung:	n/a	n/a
17	BHLHE40	chr12:120729225-120730295	K562	blood:	n/a	n/a
18	MAX	chr12:120729153-120730289	SK-N-SH	brain:	n/a	n/a
19	EP300	chr12:120729131-120730213	GM12878	blood:	n/a	n/a
20	POLR2A	chr12:120728616-120731421	PFSK-1	brain:	n/a	n/a
21	POLR2A	chr12:120728550-120731470	Hela-S3	cervix:	n/a	n/a
22	MXI1	chr12:120729220-120730125	H1-hESC	embryonic stem cell:	n/a	n/a
23	JUND	chr12:120728728-120730265	Hela-S3	cervix:	n/a	chr12:120729940-120729949 chr12:120729726-120729735
24	JUN	chr12:120729227-120730098	H1-hESC	embryonic stem cell:	n/a	chr12:120729940-120729949 chr12:120729726-120729735 chr12:120729936-120729949
25	EGR1	chr12:120729108-120729943	K562	blood:	n/a	n/a
26	USF1	chr12:120729085-120730204	A549	lung:	n/a	n/a
27	RELA	chr12:120729173-120730079	GM19193	blood:	n/a	n/a
28	HNF4A	chr12:120729363-120729779	HepG2	liver:	n/a	n/a
29	ELF1	chr12:120728998-120731354	GM12878	blood:	n/a	n/a
30	BATF	chr12:120729114-120729881	GM12878	blood:	n/a	n/a
31	TAF1	chr12:120729516-120730176	K562	blood:	n/a	n/a
32	POLR2A	chr12:120729002-120731295	GM12878	blood:	n/a	n/a
33	PAX5	chr12:120728991-120730196	GM12878	blood:	n/a	chr12:120729286-120729295
34	CEBPD	chr12:120729259-120730181	HepG2	liver:	n/a	n/a
35	POLR2A	chr12:120729131-120731229	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr12:120729095-120730212	HepG2	liver:	n/a	n/a
37	MEF2A	chr12:120729041-120729923	GM12878	blood:	n/a	chr12:120729231-120729246
38	MEF2C	chr12:120729247-120729826	GM12878	blood:	n/a	n/a
39	ATF3	chr12:120729093-120730182	K562	blood:	n/a	chr12:120729941-120729949 chr12:120729937-120729952 chr12:120729938-120729948 chr12:120729941-120729951 chr12:120729941-120729951 chr12:120729938-120729951 chr12:120729940-120729951 chr12:120729941-120729948 chr12:120729939-120729950 chr12:120729939-120729950 chr12:120729940-120729948
40	BRCA1	chr12:120729258-120730127	HepG2	liver:	n/a	n/a
41	RCOR1	chr12:120729184-120730261	HepG2	liver:	n/a	n/a
42	ZNF143	chr12:120729326-120730170	GM12878	blood:	n/a	chr12:120729906-120729925
43	ELF1	chr12:120729090-120730214	SK-N-SH	brain:	n/a	n/a
44	SIN3AK20	chr12:120729287-120729857	H1-hESC	embryonic stem cell:	n/a	n/a
45	CCNT2	chr12:120729222-120730135	K562	blood:	n/a	n/a
46	EP300	chr12:120729326-120729894	H1-hESC	embryonic stem cell:	n/a	n/a
47	ZBTB33	chr12:120729223-120729739	HepG2	liver:	n/a	n/a
48	ATF3	chr12:120728977-120730201	A549	lung:	n/a	chr12:120729941-120729949 chr12:120729937-120729952 chr12:120729938-120729948 chr12:120729941-120729951 chr12:120729941-120729951 chr12:120729938-120729951 chr12:120729940-120729951 chr12:120729941-120729948 chr12:120729939-120729950 chr12:120729939-120729950 chr12:120729940-120729948
49	CTCF	chr12:120729649-120729888	GM12878	blood:	n/a	n/a
50	SIN3AK20	chr12:120729305-120729806	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:120729684-120729734	AG04450	lung:	fetal
2	chr12:120729684-120729734	HIPEpiC	eye:	n/a
3	chr12:120729684-120729734	Jurkat	blood:	n/a
4	chr12:120729684-120729734	HNPCEpiC	eye:	n/a
5	chr12:120729684-120729734	CMK	blood:	n/a
6	chr12:120729684-120729734	PrEC	prostate:	n/a
7	chr12:120729684-120729734	GM12892	blood:	n/a
8	chr12:120729684-120729734	HAEpiC	amniotic membrane:	n/a
9	chr12:120729684-120729734	SKMC	muscle:	n/a
10	chr12:120729684-120729734	NH-A	brain:	n/a
11	chr12:120729684-120729734	HCF	heart:	n/a
12	chr12:120729684-120729734	HRE	kidney:	n/a
13	chr12:120729684-120729734	NHDF-neo	bronchial:	n/a
14	chr12:120729684-120729734	T-47D	breast:	n/a
15	chr12:120729684-120729734	A549	lung:	n/a
16	chr12:120729684-120729734	SK-N-MC	brain:	n/a
17	chr12:120729684-120729734	NT2-D1	testis:	n/a
18	chr12:120729684-120729734	Hela-S3	cervix:	n/a
19	chr12:120729684-120729734	HCPEpiC	choroid plexus:	n/a
20	chr12:120729684-120729734	AG09309	skin:	n/a
21	chr12:120729684-120729734	MCF-7	breast:	n/a
22	chr12:120729684-120729734	AG04449	skin:	fetal
23	chr12:120729684-120729734	NHBE	bronchial:	n/a
24	chr12:120729684-120729734	AG09319	gingival:	n/a
25	chr12:120729684-120729734	HepG2	liver:	n/a
26	chr12:120729684-120729734	PANC-1	pancreas:	n/a
27	chr12:120729684-120729734	BE2_C	brain:	n/a
28	chr12:120729684-120729734	GM06990	blood:	n/a
29	chr12:120729684-120729734	IMR90	lung:	fetal
30	chr12:120729684-120729734	HUVEC	blood vessel:	n/a
31	chr12:120729684-120729734	Hepatocyte	liver:	n/a
32	chr12:120729684-120729734	Caco-2	colon:	n/a
33	chr12:120729684-120729734	LNCaP	prostate:	n/a
34	chr12:120729684-120729734	HEEpiC	esophagus:	n/a
35	chr12:120729684-120729734	HL-60	blood:	n/a
36	chr12:120729684-120729734	PFSK-1	brain:	n/a
37	chr12:120729684-120729734	RPTEC	kidney:	n/a
38	chr12:120729684-120729734	GM12878	blood:	n/a
39	chr12:120729684-120729734	ProgFib	skin:	n/a
40	chr12:120729684-120729734	ovcar-3	ovarian:	n/a
41	chr12:120729684-120729734	AoSMC	blood vessel:	n/a
42	chr12:120729684-120729734	BJ	skin:	n/a
43	chr12:120729684-120729734	HPAEpiC	pulmonary alveolar:	n/a
44	chr12:120729684-120729734	HRCEpiC	kidney:	n/a
45	chr12:120729684-120729734	NB4	blood:	n/a
46	chr12:120729684-120729734	AG10803	skin:	n/a
47	chr12:120729684-120729734	GM12891	blood:	n/a
48	chr12:120729684-120729734	HRPEpiC	eye:	n/a
49	chr12:120729684-120729734	ECC-1	luminal epithelium:	n/a
50	chr12:120729684-120729734	SAEC	small airway:	n/a

(count:333 , 50 per page) page: 1 2 3 4 5 6 7

No.	Distal block	Cell Line	Cell type
1	chr1:44508536..44511215-chr12:120729558..120732284,2	MCF-7	breast:
2	chr12:120424138..120428272-chr12:120728453..120731316,5	K562	blood:
3	chr12:120729263..120729953-chr2:48567408..48568402,2	Hela-S3	cervix:
4	chr12:120729385..120730011-chr2:25194674..25195611,2	Hela-S3	cervix:
5	chr1:116914899..116917203-chr12:120728058..120730757,2	MCF-7	breast:
6	chr12:120727871..120730309-chr20:46130570..46132928,2	MCF-7	breast:
7	chr12:120529252..120531739-chr12:120728322..120731564,3	MCF-7	breast:
8	chr12:120727954..120730801-chr14:35872614..35874723,2	MCF-7	breast:
9	chr12:120729331..120729856-chr7:23145100..23145844,2	HCT-116	colon:
10	chr12:120426620..120429059-chr12:120727400..120730169,3	MCF-7	breast:
11	chr12:120729288..120730125-chrX:16804114..16804834,2	Hela-S3	cervix:
12	chr12:120685626..120692224-chr12:120727115..120732105,16	K562	blood:
13	chr12:120729387..120731467-chr6:13710748..13713061,2	MCF-7	breast:
14	chr12:120729209..120731364-chr8:145751583..145753528,2	MCF-7	breast:
15	chr12:120729234..120729869-chr17:49243719..49244246,2	NB4	blood:
16	chr12:120728918..120730847-chr4:164086639..164088753,2	MCF-7	breast:
17	chr12:120729250..120730010-chr22:51066521..51067242,2	NB4	blood:
18	chr12:120729544..120730458-chr14:93650988..93651542,2	Hela-S3	cervix:
19	chr12:120729283..120730124-chr5:107716642..107717534,2	Hela-S3	cervix:
20	chr12:120606014..120608808-chr12:120727801..120732027,4	MCF-7	breast:
21	chr12:120646880..120656528-chr12:120726067..120732546,19	K562	blood:
22	chr12:120729269..120732334-chr12:120971435..120974602,3	K562	blood:
23	chr12:120729175..120732150-chr15:52245837..52248186,2	MCF-7	breast:
24	chr12:120728435..120730638-chr20:55926255..55929139,2	MCF-7	breast:
25	chr12:120729488..120730036-chr6:7389750..7390446,2	Hela-S3	cervix:
26	chr12:120729277..120729973-chr15:41055717..41056485,2	Hela-S3	cervix:
27	chr12:120728477..120731826-chr12:120874371..120876435,3	K562	blood:
28	chr12:120727832..120730785-chr19:46272867..46274932,2	MCF-7	breast:
29	chr12:53298468..53299056-chr12:120729398..120729940,2	MCF-7	breast:
30	chr12:120727751..120732241-chr12:120903536..120914205,12	MCF-7	breast:
31	chr12:120729003..120729942-chr19:17326142..17326831,2	Hela-S3	cervix:
32	chr12:120615329..120617657-chr12:120728352..120730114,2	MCF-7	breast:
33	chr12:120727828..120730967-chr20:60717527..60719045,4	K562	blood:
34	chr12:120729489..120730024-chr6:26270913..26271796,2	Hela-S3	cervix:
35	chr12:120729413..120729927-chr7:123388749..123389671,2	Hela-S3	cervix:
36	chr12:120728045..120729780-chr17:59472665..59474429,2	MCF-7	breast:
37	chr12:120729232..120730736-chr19:18631698..18634072,2	MCF-7	breast:
38	chr1:36867858..36868836-chr12:120729276..120729941,3	Hela-S3	cervix:
39	chr12:120728080..120732301-chr12:120874297..120877936,6	K562	blood:
40	chr12:120728284..120730312-chr12:120764275..120767434,3	K562	blood:
41	chr10:89577213..89577931-chr12:120729063..120729972,2	HCT-116	colon:
42	chr12:120728900..120729827-chrX:153718923..153719426,2	MCF-7	breast:
43	chr12:112846897..112847434-chr12:120729258..120729819,2	NB4	blood:
44	chr12:120729256..120730135-chr14:75746268..75746938,2	Hela-S3	cervix:
45	chr12:120729218..120729841-chr7:108166147..108166820,2	Hela-S3	cervix:
46	chr1:41327575..41328153-chr12:120729404..120730312,2	Hela-S3	cervix:
47	chr12:120729532..120730152-chr20:49126494..49127073,2	Hela-S3	cervix:
48	chr12:120729370..120729886-chr5:271669..272321,2	Hela-S3	cervix:
49	chr12:120729303..120730037-chr8:97273744..97274372,2	HCT-116	colon:
50	chr12:120728049..120731590-chr12:120965249..120968541,5	K562	blood:

No data

Variant related genes	Relation type
RNU4-2	TF binding region
RNU4-2	CpG island
ENSG00000199709	Chromatin interaction
ENSG00000136280	Chromatin interaction
ENSG00000204592	Chromatin interaction
ENSG00000127824	Chromatin interaction
ENSG00000153485	Chromatin interaction
ENSG00000152147	Chromatin interaction
ENSG00000182500	Chromatin interaction
ENSG00000023572	Chromatin interaction
ENSG00000064995	Chromatin interaction
ENSG00000135392	Chromatin interaction
ENSG00000111737	Chromatin interaction
ENSG00000168374	Chromatin interaction
ENSG00000136059	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000100241	Chromatin interaction
ENSG00000152904	Chromatin interaction
ENSG00000139641	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000156469	Chromatin interaction
ENSG00000241127	Chromatin interaction
ENSG00000140612	Chromatin interaction
ENSG00000164961	Chromatin interaction
ENSG00000049618	Chromatin interaction
ENSG00000122512	Chromatin interaction
ENSG00000112715	Chromatin interaction
ENSG00000249915	Chromatin interaction
ENSG00000111653	Chromatin interaction
ENSG00000161016	Chromatin interaction
ENSG00000269054	Chromatin interaction
ENSG00000209042	Chromatin interaction
ENSG00000159720	Chromatin interaction
ENSG00000101132	Chromatin interaction
ENSG00000122550	Chromatin interaction
ENSG00000148356	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000257218	Chromatin interaction
ENSG00000156831	Chromatin interaction
ENSG00000143933	Chromatin interaction
ENSG00000173349	Chromatin interaction
ENSG00000224536	Chromatin interaction
ENSG00000140043	Chromatin interaction
ENSG00000137767	Chromatin interaction
ENSG00000163848	Chromatin interaction
ENSG00000266173	Chromatin interaction
ENSG00000108654	Chromatin interaction
ENSG00000135482	Chromatin interaction
ENSG00000256569	Chromatin interaction
ENSG00000135241	Chromatin interaction
ENSG00000172531	Chromatin interaction
ENSG00000245149	Chromatin interaction
ENSG00000179104	Chromatin interaction
ENSG00000112624	Chromatin interaction
ENSG00000113360	Chromatin interaction
ENSG00000150991	Chromatin interaction
ENSG00000022840	Chromatin interaction
ENSG00000158615	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000239881	Chromatin interaction
ENSG00000163399	Chromatin interaction
ENSG00000100299	Chromatin interaction
ENSG00000110917	Chromatin interaction
ENSG00000273063	Chromatin interaction
ENSG00000135605	Chromatin interaction
ENSG00000102780	Chromatin interaction
ENSG00000203499	Chromatin interaction
ENSG00000177764	Chromatin interaction
ENSG00000189171	Chromatin interaction
ENSG00000158402	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000198931	Chromatin interaction
ENSG00000165943	Chromatin interaction
ENSG00000272114	Chromatin interaction
ENSG00000229980	Chromatin interaction
ENSG00000014914	Chromatin interaction
ENSG00000186716	Chromatin interaction
ENSG00000116752	Chromatin interaction
ENSG00000170421	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000156471	Chromatin interaction
ENSG00000107147	Chromatin interaction
ENSG00000267727	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000261135	Chromatin interaction
ENSG00000126903	Chromatin interaction
ENSG00000131495	Chromatin interaction
ENSG00000256008	Chromatin interaction
ENSG00000132313	Chromatin interaction
ENSG00000106355	Chromatin interaction
ENSG00000131153	Chromatin interaction
ENSG00000255857	Chromatin interaction
ENSG00000105722	Chromatin interaction
ENSG00000105479	Chromatin interaction
ENSG00000260657	Chromatin interaction
ENSG00000123358	Chromatin interaction
ENSG00000111669	Chromatin interaction
ENSG00000173653	Chromatin interaction
ENSG00000084092	Chromatin interaction
ENSG00000201628	Chromatin interaction
ENSG00000100243	Chromatin interaction
ENSG00000264063	Chromatin interaction
ENSG00000086712	Chromatin interaction
ENSG00000204576	Chromatin interaction
ENSG00000162006	Chromatin interaction
ENSG00000117036	Chromatin interaction
ENSG00000145414	Chromatin interaction
ENSG00000124151	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000258017	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000155903	Chromatin interaction
ENSG00000089154	Chromatin interaction
ENSG00000168488	Chromatin interaction
ENSG00000184402	Chromatin interaction
ENSG00000011021	Chromatin interaction
ENSG00000135127	Chromatin interaction
ENSG00000224165	Chromatin interaction
ENSG00000223820	Chromatin interaction
ENSG00000213137	Chromatin interaction
ENSG00000163918	Chromatin interaction
ENSG00000182796	Chromatin interaction
ENSG00000236794	Chromatin interaction
ENSG00000202339	Chromatin interaction
ENSG00000142178	Chromatin interaction
ENSG00000258496	Chromatin interaction
ENSG00000106330	Chromatin interaction
ENSG00000272081	Chromatin interaction
ENSG00000101213	Chromatin interaction
ENSG00000138138	Chromatin interaction
ENSG00000221521	Chromatin interaction
ENSG00000159176	Chromatin interaction
ENSG00000109062	Chromatin interaction
ENSG00000172869	Chromatin interaction
ENSG00000137880	Chromatin interaction
ENSG00000185633	Chromatin interaction
ENSG00000048392	Chromatin interaction
ENSG00000089009	Chromatin interaction
ENSG00000139116	Chromatin interaction
ENSG00000197763	Chromatin interaction
ENSG00000258653	Chromatin interaction
ENSG00000266402	Chromatin interaction
ENSG00000177426	Chromatin interaction
ENSG00000105778	Chromatin interaction
ENSG00000170727	Chromatin interaction
ENSG00000101182	Chromatin interaction
ENSG00000144802	Chromatin interaction
ENSG00000111725	Chromatin interaction
ENSG00000120129	Chromatin interaction
ENSG00000120709	Chromatin interaction
ENSG00000132623	Chromatin interaction
ENSG00000201164	Chromatin interaction
ENSG00000183891	Chromatin interaction
ENSG00000264462	Chromatin interaction
ENSG00000165501	Chromatin interaction
ENSG00000181789	Chromatin interaction
ENSG00000167747	Chromatin interaction
ENSG00000089159	Chromatin interaction
ENSG00000230615	Chromatin interaction
ENSG00000149932	Chromatin interaction
ENSG00000230454	Chromatin interaction
ENSG00000266704	Chromatin interaction
ENSG00000132819	Chromatin interaction
ENSG00000151065	Chromatin interaction
ENSG00000157107	Chromatin interaction
ENSG00000267212	Chromatin interaction
ENSG00000100219	Chromatin interaction
ENSG00000186312	Chromatin interaction
ENSG00000150967	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000253459	Chromatin interaction
ENSG00000111786	Chromatin interaction
ENSG00000180694	Chromatin interaction
ENSG00000113810	Chromatin interaction
ENSG00000164402	Chromatin interaction
ENSG00000196396	Chromatin interaction
ENSG00000108423	Chromatin interaction
ENSG00000258890	Chromatin interaction
ENSG00000179523	Chromatin interaction
ENSG00000068885	Chromatin interaction
ENSG00000197958	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000206652	Chromatin interaction
ENSG00000112378	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000115827	Chromatin interaction
ENSG00000229474	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000171421	Chromatin interaction
ENSG00000115875	Chromatin interaction
ENSG00000204220	Chromatin interaction
ENSG00000160209	Chromatin interaction
ENSG00000264052	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000105656	Chromatin interaction
ENSG00000232559	Chromatin interaction
ENSG00000157837	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000106299	Chromatin interaction
ENSG00000123600	Chromatin interaction
ENSG00000141378	Chromatin interaction
ENSG00000129514	Chromatin interaction
ENSG00000272849	Chromatin interaction
ENSG00000238923	Chromatin interaction
ENSG00000117906	Chromatin interaction
ENSG00000001630	Chromatin interaction
ENSG00000232810	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000204590	Chromatin interaction
ENSG00000105926	Chromatin interaction
ENSG00000145743	Chromatin interaction
ENSG00000110871	Chromatin interaction
ENSG00000243678	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000259066	Chromatin interaction
ENSG00000183735	Chromatin interaction
ENSG00000251889	Chromatin interaction
ENSG00000155846	Chromatin interaction
ENSG00000254402	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000104131	Chromatin interaction
ENSG00000243910	Chromatin interaction
ENSG00000087086	Chromatin interaction
ENSG00000111775	Chromatin interaction
ENSG00000145494	Chromatin interaction
ENSG00000230658	Chromatin interaction
ENSG00000105699	Chromatin interaction
ENSG00000124784	Chromatin interaction
ENSG00000135097	Chromatin interaction
ENSG00000009954	Chromatin interaction
ENSG00000089157	Chromatin interaction
ENSG00000226471	Chromatin interaction
ENSG00000270049	Chromatin interaction
ENSG00000164304	Chromatin interaction
ENSG00000149925	Chromatin interaction
ENSG00000082213	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000159445	Chromatin interaction
ENSG00000185122	Chromatin interaction
ENSG00000213741	Chromatin interaction
ENSG00000162923	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000115137	Chromatin interaction
ENSG00000108443	Chromatin interaction
ENSG00000177000	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000261373	Chromatin interaction
ENSG00000205795	Chromatin interaction
ENSG00000127838	Chromatin interaction
ENSG00000247315	Chromatin interaction
ENSG00000138430	Chromatin interaction
ENSG00000167733	Chromatin interaction
ENSG00000143786	Chromatin interaction
ENSG00000104936	Chromatin interaction
ENSG00000265455	Chromatin interaction
ENSG00000027847	Chromatin interaction
ENSG00000188693	Chromatin interaction
ENSG00000170881	Chromatin interaction
ENSG00000119414	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000252659	Chromatin interaction
ENSG00000167272	Chromatin interaction
ENSG00000182795	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000010017	Chromatin interaction
ENSG00000125148	Chromatin interaction
ENSG00000198113	Chromatin interaction
ENSG00000177189	Chromatin interaction
ENSG00000222821	Chromatin interaction
ENSG00000166710	Chromatin interaction
ENSG00000271991	Chromatin interaction
ENSG00000248008	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000263913	Chromatin interaction
ENSG00000271899	Chromatin interaction
ENSG00000170909	Chromatin interaction
ENSG00000200889	Chromatin interaction
ENSG00000015133	Chromatin interaction
ENSG00000252560	Chromatin interaction
ENSG00000096401	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000123416	Chromatin interaction
ENSG00000160182	Chromatin interaction
ENSG00000203593	Chromatin interaction
ENSG00000088451	Chromatin interaction
ENSG00000122971	Chromatin interaction
ENSG00000272173	Chromatin interaction
ENSG00000149923	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000139726	Chromatin interaction
ENSG00000199753	Chromatin interaction
ENSG00000272686	Chromatin interaction
ENSG00000174586	Chromatin interaction
ENSG00000075399	Chromatin interaction
ENSG00000116514	Chromatin interaction
ENSG00000111325	Chromatin interaction
ENSG00000201801	Chromatin interaction
ENSG00000248636	Chromatin interaction
ENSG00000271843	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000249494	Chromatin interaction
ENSG00000111912	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000179862	Chromatin interaction
ENSG00000263583	Chromatin interaction
ENSG00000160678	Chromatin interaction
ENSG00000170906	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000170889	Chromatin interaction
ENSG00000230415	Chromatin interaction
ENSG00000171988	Chromatin interaction
ENSG00000130985	Chromatin interaction
ENSG00000179818	Chromatin interaction
ENSG00000170855	Chromatin interaction
ENSG00000162191	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000124688	Chromatin interaction
ENSG00000111780	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000053501	Chromatin interaction
ENSG00000256028	Chromatin interaction
ENSG00000101146	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000227057	Chromatin interaction
ENSG00000267395	Chromatin interaction
ENSG00000141232	Chromatin interaction
ENSG00000128789	Chromatin interaction
ENSG00000154719	Chromatin interaction
ENSG00000160087	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000047315	Chromatin interaction
ENSG00000113141	Chromatin interaction
ENSG00000264624	Chromatin interaction
ENSG00000112658	Chromatin interaction
ENSG00000181013	Chromatin interaction
ENSG00000240925	Chromatin interaction
ENSG00000111678	Chromatin interaction
ENSG00000161179	Chromatin interaction
ENSG00000004487	Chromatin interaction
ENSG00000160957	Chromatin interaction
ENSG00000198805	Chromatin interaction
ENSG00000125534	Chromatin interaction
ENSG00000153956	Chromatin interaction
ENSG00000170890	Chromatin interaction
ENSG00000142227	Chromatin interaction
ENSG00000268230	Chromatin interaction
ENSG00000164070	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000169564	Chromatin interaction
ENSG00000008513	Chromatin interaction
ENSG00000266680	Chromatin interaction
ENSG00000231119	Chromatin interaction
ENSG00000101624	Chromatin interaction
ENSG00000267580	Chromatin interaction
ENSG00000252974	Chromatin interaction
ENSG00000136888	Chromatin interaction
ENSG00000109046	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000115392	Chromatin interaction
ENSG00000104472	Chromatin interaction
ENSG00000135913	Chromatin interaction
ENSG00000219410	Chromatin interaction
ENSG00000085760	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10849740	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35989529	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4766960	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6490288	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7299308	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7311566	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7960743	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases
2	nsv832530	chr12:120586069-120758175	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	484 gene(s)	inside rSNPs	diseases
3	nsv1035698	chr12:120645330-120777580	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
4	nsv1047447	chr12:120645330-120808621	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
5	nsv560435	chr12:120695141-120769657	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	433 gene(s)	inside rSNPs	diseases
6	nsv899556	chr12:120695141-120779931	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	433 gene(s)	inside rSNPs	diseases
7	esv1799498	chr12:120725939-120745740	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	429 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120725200-120729800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:120725200-120730000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:120725200-120730000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:120727600-120729800	Enhancers	Fetal Brain Male	brain
5	chr12:120728400-120729800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:120728400-120729800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr12:120728400-120729800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:120728400-120730800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:120728400-120731000	Active TSS	Pancreas	Pancrea
10	chr12:120728400-120731200	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr12:120728400-120731400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:120728400-120731400	Active TSS	Rectal Smooth Muscle	rectum
13	chr12:120728600-120729800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr12:120728600-120730200	Enhancers	Fetal Heart	heart
15	chr12:120728600-120730400	Active TSS	Brain Angular Gyrus	brain
16	chr12:120728600-120730600	Active TSS	Fetal Kidney	kidney
17	chr12:120728600-120730800	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr12:120728600-120730800	Active TSS	Right Atrium	heart
19	chr12:120728600-120731000	Active TSS	H9 Cell Line	embryonic stem cell
20	chr12:120728600-120731000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr12:120728600-120731000	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr12:120728600-120731200	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr12:120728600-120731200	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr12:120728600-120731200	Active TSS	Colon Smooth Muscle	Colon
25	chr12:120728600-120731400	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr12:120728600-120731400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:120728600-120731400	Active TSS	Colonic Mucosa	Colon
28	chr12:120728600-120731400	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr12:120728600-120731400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr12:120728600-120731600	Active TSS	Brain Substantia Nigra	brain
31	chr12:120728800-120730400	Active TSS	Fetal Brain Female	brain
32	chr12:120728800-120730600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
33	chr12:120728800-120731000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr12:120728800-120731000	Active TSS	Left Ventricle	heart
35	chr12:120728800-120731200	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr12:120728800-120731200	Active TSS	Right Ventricle	heart
37	chr12:120728800-120731600	Active TSS	Psoas Muscle	Psoas
38	chr12:120729000-120729800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr12:120729000-120729800	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr12:120729000-120729800	Weak transcription	HSMMtube	muscle
41	chr12:120729000-120729800	Enhancers	NH-A	brain
42	chr12:120729000-120729800	Weak transcription	NHDF-Ad	bronchial
43	chr12:120729000-120730400	Active TSS	Aorta	Aorta
44	chr12:120729000-120730400	Active TSS	Hela-S3	cervix
45	chr12:120729000-120730400	Active TSS	HUVEC	blood vessel
46	chr12:120729000-120730600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr12:120729000-120731000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr12:120729000-120731000	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr12:120729000-120731000	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr12:120729000-120731000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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