Variant report

Variant	rs35878762
Chromosome Location	chr1:147826434-147826435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:147804414..147808895-chr1:147821960..147830367,17	K562	blood:
2	chr1:147821017..147824443-chr1:147825069..147827851,3	K562	blood:
3	chr1:147806050..147808826-chr1:147824266..147828918,5	MCF-7	breast:
4	chr1:147803764..147809106-chr1:147820884..147827251,14	MCF-7	breast:
5	chr1:147736895..147739205-chr1:147825890..147827678,2	K562	blood:
6	chr1:147821017..147824443-chr1:147825069..147827545,3	K562	blood:
7	chr1:147819228..147820914-chr1:147825465..147827645,3	MCF-7	breast:
8	chr1:147825299..147827647-chr1:147828132..147830272,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000202408	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55940621	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916870	chr1:147245576-147828089	Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	210 gene(s)	inside rSNPs	diseases
2	esv1805360	chr1:147259638-148026038	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	225 gene(s)	inside rSNPs	diseases
3	esv1830125	chr1:147259638-148215245	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	227 gene(s)	inside rSNPs	diseases
4	nsv1000564	chr1:147339968-147831171	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	209 gene(s)	inside rSNPs	diseases
5	nsv534184	chr1:147505013-148209425	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	212 gene(s)	inside rSNPs	diseases
6	esv3441203	chr1:147508791-147830015	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
7	nsv831448	chr1:147698353-147862394	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	191 gene(s)	inside rSNPs	diseases
8	nsv547679	chr1:147706692-147858944	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	189 gene(s)	inside rSNPs	diseases
9	nsv872269	chr1:147707383-147841663	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	188 gene(s)	inside rSNPs	diseases
10	esv2830093	chr1:147707383-147858933	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	189 gene(s)	inside rSNPs	diseases
11	nsv482522	chr1:147712873-147882767	Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	192 gene(s)	inside rSNPs	diseases
12	nsv999451	chr1:147713004-147831171	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	187 gene(s)	inside rSNPs	diseases
13	nsv1003955	chr1:147713004-148555452	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	268 gene(s)	inside rSNPs	diseases
14	nsv1009417	chr1:147724723-147831171	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	186 gene(s)	inside rSNPs	diseases
15	nsv547681	chr1:147727386-147827829	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
16	nsv872270	chr1:147727386-147841663	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	187 gene(s)	inside rSNPs	diseases
17	nsv872271	chr1:147727386-147930379	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	192 gene(s)	inside rSNPs	diseases
18	nsv1013285	chr1:147731330-147831171	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	186 gene(s)	inside rSNPs	diseases
19	nsv1004831	chr1:147731330-148555452	Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	267 gene(s)	inside rSNPs	diseases
20	nsv547682	chr1:147735787-147826658	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	184 gene(s)	inside rSNPs	diseases
21	nsv872272	chr1:147735787-147841663	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	186 gene(s)	inside rSNPs	diseases
22	nsv872273	chr1:147735787-147841663	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	186 gene(s)	inside rSNPs	diseases
23	nsv872274	chr1:147735787-147858933	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	187 gene(s)	inside rSNPs	diseases
24	nsv872275	chr1:147743617-147858933	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	150 gene(s)	inside rSNPs	diseases
25	nsv872276	chr1:147786724-147858933	Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	149 gene(s)	inside rSNPs	diseases
26	esv1819951	chr1:147808037-148000664	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
27	esv1842141	chr1:147825227-148178527	Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:147824800-147827400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr1:147825000-147826600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:147825000-147826800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:147825000-147827400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr1:147825200-147826800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
6	chr1:147825200-147827200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr1:147825200-147827400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr1:147825400-147827200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr1:147825400-147827200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr1:147825600-147827000	Bivalent Enhancer	Fetal Heart	heart
11	chr1:147825800-147826600	Flanking Bivalent TSS/Enh	NHEK	skin
12	chr1:147825800-147826800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:147825800-147826800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:147825800-147826800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:147825800-147826800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
16	chr1:147825800-147826800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:147825800-147826800	Bivalent Enhancer	Liver	Liver
18	chr1:147825800-147826800	Bivalent Enhancer	Brain Germinal Matrix	brain
19	chr1:147825800-147826800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr1:147825800-147826800	Bivalent/Poised TSS	NH-A	brain
21	chr1:147825800-147827000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:147825800-147827200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
23	chr1:147825800-147827200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr1:147825800-147827200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:147825800-147827200	Bivalent Enhancer	Fetal Brain Male	brain
26	chr1:147826000-147826600	Bivalent/Poised TSS	Right Ventricle	heart
27	chr1:147826000-147826800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:147826000-147826800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr1:147826000-147827000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
30	chr1:147826000-147827000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
31	chr1:147826000-147827000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:147826000-147827000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:147826000-147827200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:147826200-147826600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:147826200-147826800	Bivalent Enhancer	Fetal Thymus	thymus
36	chr1:147826200-147826800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
37	chr1:147826200-147826800	Bivalent/Poised TSS	Osteobl	bone
38	chr1:147826200-147827000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr1:147826200-147827000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:147826200-147827400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
41	chr1:147826400-147826600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
42	chr1:147826400-147826600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr1:147826400-147826600	Bivalent Enhancer	Adipose Nuclei	Adipose
44	chr1:147826400-147826600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
45	chr1:147826400-147826600	Bivalent Enhancer	Fetal Kidney	kidney
46	chr1:147826400-147826800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:147826400-147826800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
48	chr1:147826400-147826800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
49	chr1:147826400-147826800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr1:147826400-147827000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links