Variant report

Variant	rs35878881
Chromosome Location	chr14:31892644-31892645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10143032	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11156667	0.81[ASN][1000 genomes]
rs11622544	0.82[ASN][1000 genomes]
rs11624231	0.87[EUR][1000 genomes]
rs11628429	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12050093	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17097879	0.99[ASN][1000 genomes]
rs17097881	0.87[EUR][1000 genomes]
rs17555812	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58339873	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72672674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8005942	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35878881	C14orf126	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31890200-31895000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:31890200-31896000	Weak transcription	Lung	lung
3	chr14:31890200-31902200	Weak transcription	Aorta	Aorta
4	chr14:31890200-31904200	Weak transcription	Right Atrium	heart
5	chr14:31890400-31893000	Weak transcription	NH-A	brain
6	chr14:31890400-31895200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:31890400-31895600	Weak transcription	Adipose Nuclei	Adipose
8	chr14:31890400-31897600	Weak transcription	Fetal Intestine Small	intestine
9	chr14:31890400-31898200	Weak transcription	Brain Germinal Matrix	brain
10	chr14:31890400-31899600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:31890400-31899800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:31890400-31900800	Weak transcription	Primary B cells from cord blood	blood
13	chr14:31890400-31900800	Weak transcription	Fetal Brain Female	brain
14	chr14:31890400-31900800	Weak transcription	Fetal Lung	lung
15	chr14:31890400-31900800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:31890400-31901000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:31890400-31901000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:31890400-31907400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr14:31890400-31910400	Weak transcription	Placenta	Placenta
20	chr14:31890400-31910400	Weak transcription	Ovary	ovary
21	chr14:31890400-31917400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:31890400-31921200	Weak transcription	Psoas Muscle	Psoas
23	chr14:31890400-31925800	Weak transcription	Right Ventricle	heart
24	chr14:31890600-31894800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:31890600-31900800	Weak transcription	Primary T cells from cord blood	blood
26	chr14:31890600-31900800	Weak transcription	Brain Substantia Nigra	brain
27	chr14:31890600-31901000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:31890600-31904400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:31890600-31910600	Weak transcription	Fetal Heart	heart
30	chr14:31890600-31919000	Weak transcription	Brain Anterior Caudate	brain
31	chr14:31890600-31919200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:31890600-31920600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr14:31890600-31922400	Weak transcription	Brain Angular Gyrus	brain
34	chr14:31890800-31895000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:31890800-31899600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:31890800-31901000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:31890800-31920800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:31890800-31925200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr14:31891000-31900400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr14:31891200-31900600	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:31892400-31894600	Weak transcription	K562	blood
42	chr14:31892600-31892800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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