Variant report

Variant	rs35880601
Chromosome Location	chr2:113726580-113726581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10171072	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10184412	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11683399	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11690185	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11695110	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11696039	0.81[ASN][1000 genomes]
rs11893071	0.83[AMR][1000 genomes]
rs12464758	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12465526	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12466604	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12466653	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12466697	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12470439	0.81[ASN][1000 genomes]
rs12614316	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12614988	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12616801	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12617864	0.83[AMR][1000 genomes]
rs12618418	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12623837	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12993351	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12995439	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13026837	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13033104	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1317913	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13418326	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2305152	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34027384	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs66591921	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6705432	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6716380	0.83[AMR][1000 genomes]
rs6722962	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6723197	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6733001	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6733003	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs67995749	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs725139	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs725140	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv2880	chr2:113716802-113736921	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1005641	chr2:113720402-113728169	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113726400-113727000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr2:113726400-113727000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr2:113726400-113727200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:113726400-113727400	Enhancers	Primary T cells from cord blood	blood

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