Variant report

Variant	rs35881531
Chromosome Location	chr12:76101051-76101052
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:76098673..76101455-chr12:76339304..76341951,2	MCF-7	breast:
2	chr12:76099926..76101874-chr12:76365799..76367689,2	MCF-7	breast:
3	chr12:76100797..76102905-chr12:76103958..76106069,2	K562	blood:
4	chr12:76092093..76110851-chr12:76415034..76433496,122	MCF-7	breast:
5	chr12:76023357..76025100-chr12:76099295..76101249,2	MCF-7	breast:
6	chr12:76015734..76021626-chr12:76097256..76101818,9	MCF-7	breast:
7	chr12:76096760..76101934-chr12:76112737..76117926,8	MCF-7	breast:
8	chr12:76098481..76102086-chr12:76423023..76426874,6	MCF-7	breast:
9	chr12:76097180..76098838-chr12:76099370..76102152,2	MCF-7	breast:
10	chr12:76098531..76101496-chr12:76371674..76373378,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000139289	Chromatin interaction
ENSG00000257839	Chromatin interaction
ENSG00000257453	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11180625	0.81[ASN][1000 genomes]
rs11180639	0.88[ASN][1000 genomes]
rs11180640	0.88[ASN][1000 genomes]
rs11180644	0.95[ASN][1000 genomes]
rs12315800	0.86[ASN][1000 genomes]
rs12319659	0.88[ASN][1000 genomes]
rs12812846	1.00[ASN][1000 genomes]
rs12822896	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12826237	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17223072	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17223194	0.86[ASN][1000 genomes]
rs17223651	0.88[ASN][1000 genomes]
rs2367073	0.88[ASN][1000 genomes]
rs2367074	0.88[ASN][1000 genomes]
rs34724924	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35094428	0.84[EUR][1000 genomes]
rs35813830	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67943440	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7132221	0.88[ASN][1000 genomes]
rs71460142	0.88[ASN][1000 genomes]
rs71460144	0.88[ASN][1000 genomes]
rs7295259	0.88[ASN][1000 genomes]
rs7295484	0.88[ASN][1000 genomes]
rs7295806	0.88[ASN][1000 genomes]
rs73124349	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7313785	0.88[ASN][1000 genomes]
rs7967547	0.82[ASN][1000 genomes]
rs7978873	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036987	chr12:75415532-76101559	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv948653	chr12:75773464-76220618	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv899314	chr12:76079814-76110751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:76098200-76104000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr12:76098400-76104600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:76098400-76105200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:76098600-76101800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:76098800-76104600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr12:76098800-76105000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:76098800-76114200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:76098800-76114400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:76099200-76101800	Enhancers	NHLF	lung
10	chr12:76099200-76102200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:76099400-76101400	Enhancers	Fetal Muscle Leg	muscle
12	chr12:76099600-76101600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr12:76099600-76110800	Enhancers	HepG2	liver
14	chr12:76099800-76101600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:76099800-76103000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:76099800-76103600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:76100000-76106800	Weak transcription	Right Ventricle	heart
18	chr12:76100000-76115200	Weak transcription	Pancreas	Pancrea
19	chr12:76100200-76101600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:76100200-76104600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr12:76100400-76101200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:76100400-76101400	Enhancers	NHEK	skin
23	chr12:76100400-76101600	Enhancers	Hela-S3	cervix
24	chr12:76100400-76102000	Weak transcription	Ovary	ovary
25	chr12:76100400-76104600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr12:76100400-76104600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr12:76100400-76105400	Weak transcription	Psoas Muscle	Psoas
28	chr12:76100400-76106800	Weak transcription	Right Atrium	heart
29	chr12:76100400-76108400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr12:76100600-76101400	Enhancers	Left Ventricle	heart
31	chr12:76100600-76103200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr12:76100600-76105400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr12:76100800-76101800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr12:76100800-76102200	Enhancers	Osteobl	bone
35	chr12:76100800-76102600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr12:76100800-76102800	Weak transcription	Fetal Kidney	kidney
37	chr12:76100800-76103400	Weak transcription	Aorta	Aorta
38	chr12:76100800-76104000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:76100800-76104600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:76100800-76104800	Enhancers	HUVEC	blood vessel
41	chr12:76100800-76105000	Enhancers	NHDF-Ad	bronchial
42	chr12:76100800-76107000	Weak transcription	Small Intestine	intestine
43	chr12:76101000-76101600	Enhancers	Fetal Heart	heart
44	chr12:76101000-76101800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr12:76101000-76101800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr12:76101000-76102200	Enhancers	K562	blood
47	chr12:76101000-76102600	Weak transcription	Fetal Lung	lung
48	chr12:76101000-76102600	Weak transcription	A549	lung
49	chr12:76101000-76103000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr12:76101000-76103400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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