Variant report
| Variant | rs35882473 |
|---|---|
| Chromosome Location | chr4:76988082-76988083 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:76987150..76989356-chr4:77009546..77012461,2 | K562 | blood: | |
| 2 | chr4:76981233..76983352-chr4:76986434..76988811,2 | K562 | blood: | |
| 3 | chr4:76984026..76985815-chr4:76987475..76989817,2 | K562 | blood: | |
| 4 | chr4:76918990..76920768-chr4:76987406..76989300,2 | MCF-7 | breast: | |
| 5 | chr4:76919294..76923061-chr4:76987395..76990335,3 | MCF-7 | breast: | |
| 6 | chr4:76984026..76986606-chr4:76987101..76988975,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs10002977 | 0.84[EUR][1000 genomes] |
| rs13121161 | 0.84[EUR][1000 genomes] |
| rs28655366 | 0.82[EUR][1000 genomes] |
| rs4508917 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7688312 | 0.84[EUR][1000 genomes] |
| rs884304 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3353539 | chr4:76530136-76993859 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv529613 | chr4:76654941-77081576 | Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004627 | chr4:76793910-76999584 | Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:9)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs35882473 | NAAA | cis | Esophagus Mucosa | GTEx |
| rs35882473 | ASAHL | Cis_1M | lymphoblastoid | RTeQTL |
| rs35882473 | NAAA | cis | Adipose Subcutaneous | GTEx |
| rs35882473 | NAAA | cis | Whole Blood | GTEx |
| rs35882473 | NAAA | cis | Esophagus Muscularis | GTEx |
| rs35882473 | CXCL10 | Cis_1M | lymphoblastoid | RTeQTL |
| rs35882473 | NAAA | cis | Skin Sun Exposed Lower leg | GTEx |
| rs35882473 | NAAA | cis | Muscle Skeletal | GTEx |
| rs35882473 | NAAA | cis | Artery Aorta | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:76987800-76988400 | Enhancers | Fetal Muscle Trunk | muscle |
