Variant report

Variant	rs35882757
Chromosome Location	chr15:76605881-76605882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr15:76604824-76606601	A549	lung:	n/a	n/a
2	MAX	chr15:76604763-76606536	A549	lung:	n/a	n/a
3	MAFK	chr15:76605878-76606332	K562	blood:	n/a	n/a
4	MAX	chr15:76604694-76606678	A549	lung:	n/a	n/a
5	REST	chr15:76604602-76606522	A549	lung:	n/a	n/a
6	FOSL2	chr15:76604508-76606502	A549	lung:	n/a	n/a
7	TCF7L2	chr15:76604983-76606431	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr15:76605150-76605993	A549	lung:	n/a	n/a
9	SMARCC1	chr15:76604769-76606435	Hela-S3	cervix:	n/a	n/a
10	RPC155	chr15:76605239-76605967	Hela-S3	cervix:	n/a	n/a
11	TBP	chr15:76605770-76606277	K562	blood:	n/a	n/a
12	TFAP2C	chr15:76604746-76606547	Hela-S3	cervix:	n/a	chr15:76605377-76605392
13	ZBTB7A	chr15:76605869-76606051	K562	blood:	n/a	n/a
14	GTF3C2	chr15:76605185-76606000	Hela-S3	cervix:	n/a	n/a
15	TCF12	chr15:76604657-76606769	A549	lung:	n/a	n/a
16	IRF1	chr15:76605802-76606430	K562	blood:	n/a	n/a
17	EP300	chr15:76605129-76605898	Hela-S3	cervix:	n/a	n/a
18	MYC	chr15:76605783-76606261	K562	blood:	n/a	n/a
19	BCL3	chr15:76604707-76606149	A549	lung:	n/a	n/a
20	RCOR1	chr15:76605827-76606551	K562	blood:	n/a	n/a
21	CEBPB	chr15:76605076-76605953	Hela-S3	cervix:	n/a	n/a
22	MAX	chr15:76605043-76606375	Hela-S3	cervix:	n/a	n/a
23	CEBPB	chr15:76604708-76606479	A549	lung:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76601284..76605220-chr15:76605803..76613495,17	K562	blood:
2	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
3	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
4	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
5	chr15:76573073..76575469-chr15:76605288..76607304,2	MCF-7	breast:
6	chr15:76604802..76606411-chr15:76677326..76680311,2	MCF-7	breast:
7	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
8	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:
9	chr15:76605423..76608075-chr15:76608528..76612438,4	MCF-7	breast:
10	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

No data

Variant related genes	Relation type
ETFA	TF binding region
ENSG00000140386	Chromatin interaction
ENSG00000259514	Chromatin interaction
ENSG00000159556	Chromatin interaction
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2306830	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520069	chr15:76602212-76609181	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76604200-76606000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:76604200-76606000	Enhancers	Adipose Nuclei	Adipose
3	chr15:76604200-76606000	Enhancers	Stomach Mucosa	stomach
4	chr15:76604200-76606200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:76604200-76606400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:76604200-76606600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:76604200-76606600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:76604200-76608000	Enhancers	Placenta	Placenta
9	chr15:76604200-76608800	Weak transcription	Right Atrium	heart
10	chr15:76604200-76609000	Weak transcription	Primary T cells from cord blood	blood
11	chr15:76604200-76613600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:76604400-76606400	Flanking Active TSS	A549	lung
13	chr15:76604400-76606600	Flanking Active TSS	Hela-S3	cervix
14	chr15:76604400-76613600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:76604600-76606400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr15:76604600-76606400	Flanking Active TSS	K562	blood
17	chr15:76604800-76606000	Enhancers	Left Ventricle	heart
18	chr15:76604800-76606400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:76605000-76606400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:76605200-76606200	Weak transcription	Esophagus	oesophagus
21	chr15:76605200-76606400	Enhancers	Liver	Liver
22	chr15:76605400-76606200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:76605400-76606200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr15:76605400-76606400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:76605600-76606000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:76605600-76606400	Enhancers	HepG2	liver
27	chr15:76605600-76606600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:76605600-76606600	Enhancers	NHEK	skin
29	chr15:76605800-76606000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
30	chr15:76605800-76606400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links