Variant report

Variant	rs35887553
Chromosome Location	chr6:44221831-44221832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44220564..44222715-chr6:44354509..44356656,2	MCF-7	breast:
2	chr6:44189603..44194222-chr6:44219459..44225598,7	MCF-7	breast:
3	chr17:7386545..7389187-chr6:44221331..44223122,2	K562	blood:
4	chr6:43596077..43597604-chr6:44220846..44222458,2	K562	blood:
5	chr1:181056458..181058688-chr6:44221777..44223533,2	MCF-7	breast:
6	chr6:44099546..44105774-chr6:44219938..44225862,7	K562	blood:

Variant related genes	Relation type
ENSG00000112759	Chromatin interaction
ENSG00000137216	Chromatin interaction
ENSG00000172432	Chromatin interaction
ENSG00000162783	Chromatin interaction
ENSG00000181222	Chromatin interaction
ENSG00000124688	Chromatin interaction
ENSG00000096401	Chromatin interaction
ENSG00000174282	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34072228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34984888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35151748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35163667	1.00[AMR][1000 genomes]
rs35788918	1.00[AMR][1000 genomes]
rs35867899	1.00[AFR][1000 genomes]
rs35936488	1.00[AMR][1000 genomes]
rs36025004	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv885851	chr6:44178471-44240559	Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv885852	chr6:44185901-44222718	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv603003	chr6:44191920-44253765	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
5	nsv462936	chr6:44191920-44282316	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
6	nsv603004	chr6:44191920-44282316	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
7	nsv885853	chr6:44197181-44274797	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv524398	chr6:44200953-44253765	Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
9	nsv885854	chr6:44211867-44274797	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
10	nsv462937	chr6:44211867-44279111	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
11	nsv603005	chr6:44211867-44279111	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44216200-44223800	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
2	chr6:44216600-44223200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:44216600-44223400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:44216600-44223400	Strong transcription	Fetal Kidney	kidney
5	chr6:44216800-44222000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:44216800-44223200	Strong transcription	Aorta	Aorta
7	chr6:44216800-44223400	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:44217000-44222200	Strong transcription	Primary B cells from cord blood	blood
9	chr6:44217000-44223200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:44217000-44223200	Strong transcription	Esophagus	oesophagus
11	chr6:44217000-44223200	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr6:44217200-44222000	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:44217200-44222000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:44217200-44222000	Strong transcription	Spleen	Spleen
15	chr6:44217200-44222200	Strong transcription	Fetal Intestine Small	intestine
16	chr6:44217200-44222200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr6:44217200-44222400	Strong transcription	Gastric	stomach
18	chr6:44217200-44222400	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:44217200-44222600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:44217200-44222800	Strong transcription	Fetal Muscle Leg	muscle
21	chr6:44217200-44223200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:44217200-44223200	Strong transcription	Colon Smooth Muscle	Colon
23	chr6:44217200-44223400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:44217200-44223600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:44217200-44223600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr6:44217200-44223800	Strong transcription	Placenta	Placenta
27	chr6:44217200-44223800	Strong transcription	Fetal Stomach	stomach
28	chr6:44217200-44223800	Strong transcription	Placenta Amnion	Placenta Amnion
29	chr6:44217400-44222200	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:44217400-44223000	Strong transcription	Small Intestine	intestine
31	chr6:44217400-44223000	Genic enhancers	HepG2	liver
32	chr6:44217400-44223200	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:44217400-44223200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:44217400-44223200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:44217400-44223200	Strong transcription	Primary T cells from cord blood	blood
36	chr6:44217400-44223200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:44217400-44223200	Strong transcription	NHDF-Ad	bronchial
38	chr6:44217400-44223400	Strong transcription	Fetal Lung	lung
39	chr6:44217400-44223800	Strong transcription	Fetal Intestine Large	intestine
40	chr6:44217600-44222000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:44217600-44222000	Strong transcription	Pancreas	Pancrea
42	chr6:44217600-44222200	Strong transcription	Fetal Brain Male	brain
43	chr6:44217600-44222400	Weak transcription	Right Atrium	heart
44	chr6:44217600-44222800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:44217600-44223200	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr6:44217600-44223200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:44217600-44223200	Strong transcription	HSMMtube	muscle
48	chr6:44217600-44223400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:44217600-44223400	Strong transcription	Lung	lung
50	chr6:44217600-44223400	Strong transcription	Ovary	ovary

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