Variant report

Variant	rs35889406
Chromosome Location	chr9:16618556-16618557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62540636	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16608400-16618600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:16609600-16619800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:16611400-16626400	Weak transcription	Aorta	Aorta
4	chr9:16611600-16618800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:16611800-16619000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:16611800-16619600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:16612800-16618800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:16613000-16619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:16613000-16624800	Weak transcription	NH-A	brain
10	chr9:16613200-16624800	Weak transcription	A549	lung
11	chr9:16613400-16619000	Weak transcription	Osteobl	bone
12	chr9:16613800-16625600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:16614000-16619200	Weak transcription	HSMMtube	muscle
14	chr9:16614000-16624200	Weak transcription	HSMM	muscle
15	chr9:16614000-16624600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:16614200-16619200	Weak transcription	NHLF	lung
17	chr9:16614400-16625400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:16614600-16619200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:16615200-16618600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:16615400-16619800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:16615600-16618800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:16615600-16625400	Weak transcription	Psoas Muscle	Psoas
23	chr9:16616400-16618800	Weak transcription	HUVEC	blood vessel
24	chr9:16617800-16618800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:16618000-16618800	Enhancers	Ovary	ovary
26	chr9:16618000-16619200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:16618000-16621400	Enhancers	Fetal Stomach	stomach
28	chr9:16618400-16618600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:16618400-16618600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:16618400-16618800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:16618400-16620000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:16618400-16620400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:16618400-16620600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:16618400-16620600	Enhancers	Fetal Kidney	kidney
35	chr9:16618400-16621200	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links