Variant report

Variant	rs358900
Chromosome Location	chr3:155401669-155401670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10936014	0.81[ASN][1000 genomes]
rs2203885	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2315589	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs358908	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs358909	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs359561	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs359562	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs359564	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs359566	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs359568	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs359569	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs359570	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs359572	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4287944	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4680210	0.84[ASN][1000 genomes]
rs6441005	0.90[ASN][1000 genomes]
rs9844708	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155395000-155416800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:155395200-155412000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155399800-155422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155400600-155404000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:155400600-155408800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:155400600-155421000	Weak transcription	Fetal Intestine Small	intestine
7	chr3:155400800-155402200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr3:155400800-155418400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:155401000-155402600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:155401000-155408800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:155401600-155401800	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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