Variant report

Variant	rs35890626
Chromosome Location	chr6:75651807-75651808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13193857	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34179553	1.00[ASN][1000 genomes]
rs35264814	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35363184	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903537	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75643000-75656800	Weak transcription	HSMMtube	muscle
2	chr6:75643800-75656800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:75647000-75657000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:75647200-75652000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:75647800-75656800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:75647800-75657000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:75648000-75652000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:75648000-75656800	Weak transcription	NH-A	brain
9	chr6:75650000-75652000	Weak transcription	NHLF	lung
10	chr6:75650400-75652000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:75650600-75652000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:75650600-75652000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:75650600-75652000	Weak transcription	Osteobl	bone
14	chr6:75651400-75656800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:75651600-75652200	Enhancers	NHDF-Ad	bronchial
16	chr6:75651600-75652600	Enhancers	NHEK	skin
17	chr6:75651600-75652800	Enhancers	HMEC	breast
18	chr6:75651800-75652400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:75651800-75652400	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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