The 2.0 version of rSNPBase

Variant report

Variant rs35893852
Chromosome Location chr1:92851452-92851453
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92804400-92853200 Weak transcription NHEK skin
2 chr1:92815000-92853200 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:92818000-92851600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr1:92818000-92852600 Weak transcription Colon Smooth Muscle Colon
5 chr1:92818200-92851600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:92818800-92853000 Weak transcription Osteobl bone
7 chr1:92823600-92853200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:92824400-92852400 Weak transcription Colonic Mucosa Colon
9 chr1:92825600-92852400 Weak transcription HepG2 liver
10 chr1:92825600-92852800 Weak transcription HMEC breast
11 chr1:92826000-92852600 Weak transcription Brain Anterior Caudate brain
12 chr1:92826200-92853000 Weak transcription Fetal Brain Male brain
13 chr1:92833400-92855000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr1:92833400-92856000 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr1:92833600-92852600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr1:92833600-92852800 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:92834400-92855200 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr1:92835400-92855200 Weak transcription Hela-S3 cervix
19 chr1:92836200-92852400 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr1:92842200-92851600 Weak transcription Fetal Thymus thymus
21 chr1:92844200-92855600 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr1:92846800-92851800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr1:92847000-92851600 Weak transcription Right Ventricle heart
24 chr1:92847000-92851800 Weak transcription Primary T cells from cord blood blood
25 chr1:92847000-92852000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr1:92847000-92852800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:92847000-92853200 Weak transcription Psoas Muscle Psoas
28 chr1:92847000-92853800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr1:92847200-92852600 Weak transcription Brain Hippocampus Middle brain
30 chr1:92847200-92854000 Weak transcription Brain Angular Gyrus brain
31 chr1:92847400-92851800 Weak transcription Primary B cells from peripheral blood blood
32 chr1:92849600-92853200 Strong transcription Cortex derived primary cultured neurospheres brain
33 chr1:92849600-92854800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:92849600-92854800 ZNF genes & repeats Aorta Aorta
35 chr1:92849600-92855200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
36 chr1:92849800-92854000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:92849800-92855200 ZNF genes & repeats Fetal Intestine Small intestine
38 chr1:92850000-92855200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
39 chr1:92850200-92851800 Strong transcription Duodenum Smooth Muscle Duodenum
40 chr1:92850200-92852000 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
41 chr1:92850200-92852600 Strong transcription Fetal Muscle Trunk muscle
42 chr1:92850200-92855000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr1:92850200-92855000 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
44 chr1:92850200-92855200 ZNF genes & repeats Liver Liver
45 chr1:92850200-92855200 ZNF genes & repeats Fetal Brain Female brain
46 chr1:92850200-92855400 ZNF genes & repeats Fetal Lung lung
47 chr1:92850400-92853200 Strong transcription Fetal Stomach stomach
48 chr1:92850600-92851800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr1:92850600-92853200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr1:92850800-92851600 ZNF genes & repeats Fetal Heart heart

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Last update: Aug 31, 2015