Variant report

Variant	rs35902694
Chromosome Location	chr1:155042886-155042887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155042381..155045033-chr1:155159357..155160915,2	K562	blood:
2	chr1:154945676..154948002-chr1:155041859..155043834,3	K562	blood:
3	chr1:155041145..155043356-chr1:155099387..155102342,2	MCF-7	breast:
4	chr1:155042542..155044238-chr1:155163284..155166122,2	K562	blood:
5	chr1:155041712..155043919-chr1:155142054..155144015,2	K562	blood:

Variant related genes	Relation type
ENSG00000160691	Chromatin interaction
ENSG00000185499	Chromatin interaction
ENSG00000169242	Chromatin interaction
ENSG00000271748	Chromatin interaction
ENSG00000273088	Chromatin interaction
ENSG00000173207	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1001848	0.85[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs10908454	0.85[JPT][hapmap]
rs10908455	0.85[JPT][hapmap]
rs10908456	0.85[JPT][hapmap]
rs11264304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11264305	0.81[EUR][1000 genomes]
rs11264306	0.85[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11264307	0.83[ASN][1000 genomes]
rs11264314	0.82[JPT][hapmap]
rs11264319	0.85[JPT][hapmap]
rs11264329	0.85[JPT][hapmap]
rs12040970	0.85[JPT][hapmap]
rs12047986	0.83[ASN][1000 genomes]
rs12145362	0.85[JPT][hapmap]
rs1462855	0.85[JPT][hapmap]
rs1564124	0.97[ASN][1000 genomes]
rs1870939	0.85[JPT][hapmap]
rs2306124	0.85[JPT][hapmap]
rs2306125	0.86[JPT][hapmap]
rs3765087	0.85[JPT][hapmap]
rs3766916	0.82[CEU][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3806256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4045192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4845407	0.85[JPT][hapmap]
rs4845408	0.85[JPT][hapmap]
rs4845712	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6427158	0.85[JPT][hapmap]
rs6665822	0.85[JPT][hapmap]
rs6693477	0.85[JPT][hapmap]
rs7365544	0.85[JPT][hapmap]
rs7367207	0.85[JPT][hapmap]
rs7367897	1.00[JPT][hapmap]
rs7368345	0.85[JPT][hapmap]
rs7534162	0.85[JPT][hapmap]
rs7548955	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs35902694	ADAM15	cis	lymphoblastoid	seeQTL
rs35902694	S100A3	cis	parietal	SCAN
rs35902694	EFNA1	cis	cerebellum	SCAN
rs35902694	SMCP	cis	cerebellum	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155037200-155043000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:155037200-155043000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:155037200-155043000	Weak transcription	HSMM	muscle
4	chr1:155037200-155043000	Weak transcription	NHDF-Ad	bronchial
5	chr1:155037200-155043000	Weak transcription	NHLF	lung
6	chr1:155037400-155043000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:155037400-155043000	Weak transcription	Osteobl	bone
8	chr1:155037600-155043000	Weak transcription	Fetal Kidney	kidney
9	chr1:155037600-155043000	Weak transcription	GM12878-XiMat	blood
10	chr1:155037600-155043000	Weak transcription	NHEK	skin
11	chr1:155037600-155043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:155037800-155043000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:155037800-155043000	Weak transcription	NH-A	brain
14	chr1:155038800-155043000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:155039400-155043000	Weak transcription	Liver	Liver
16	chr1:155040000-155043000	Weak transcription	HepG2	liver
17	chr1:155041400-155043000	Weak transcription	Fetal Lung	lung
18	chr1:155041400-155043400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:155041600-155043000	Weak transcription	HUVEC	blood vessel
20	chr1:155041600-155043200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:155042000-155043000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:155042000-155043000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr1:155042000-155043000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:155042000-155043000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr1:155042000-155043000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr1:155042000-155043000	Enhancers	A549	lung
27	chr1:155042000-155043200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr1:155042000-155043200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr1:155042000-155043200	Weak transcription	HSMMtube	muscle
30	chr1:155042000-155043400	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr1:155042000-155044000	Flanking Active TSS	Brain Germinal Matrix	brain
32	chr1:155042200-155043000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:155042200-155043000	Weak transcription	Primary T cells from cord blood	blood
34	chr1:155042200-155043000	Enhancers	Primary T cells fromperipheralblood	blood
35	chr1:155042200-155043000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:155042200-155043000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr1:155042200-155043000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:155042200-155043000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:155042200-155043000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr1:155042200-155043000	Enhancers	Brain Cingulate Gyrus	brain
41	chr1:155042200-155043000	Enhancers	Fetal Brain Male	brain
42	chr1:155042200-155043000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
43	chr1:155042200-155043000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr1:155042200-155043000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr1:155042200-155043000	Enhancers	K562	blood
46	chr1:155042200-155043200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr1:155042200-155043200	Enhancers	Fetal Muscle Leg	muscle
48	chr1:155042200-155043200	Enhancers	Placenta	Placenta
49	chr1:155042200-155045000	Weak transcription	Dnd41	blood
50	chr1:155042400-155043000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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