Variant report

Variant	rs35903670
Chromosome Location	chr1:180121669-180121670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr1:180121668-180122069	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:180060321..180062626-chr1:180121553..180123534,4	MCF-7	breast:
2	chr1:180103980..180105902-chr1:180120420..180121995,2	MCF-7	breast:
3	chr1:180109932..180112525-chr1:180121644..180123894,2	MCF-7	breast:

Variant related genes	Relation type
QSOX1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12756261	1.00[ASN][1000 genomes]
rs12757880	1.00[ASN][1000 genomes]
rs12760195	1.00[ASN][1000 genomes]
rs17371166	1.00[ASN][1000 genomes]
rs34012178	1.00[ASN][1000 genomes]
rs34014531	1.00[ASN][1000 genomes]
rs35471507	1.00[ASN][1000 genomes]
rs4259598	1.00[ASN][1000 genomes]
rs6425612	1.00[ASN][1000 genomes]
rs6425615	1.00[ASN][1000 genomes]
rs71630255	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429936	chr1:179790343-180214343	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1003739	chr1:180027760-180483292	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv535217	chr1:180027760-180483292	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1012558	chr1:180027960-180217613	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv535218	chr1:180027960-180217613	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv497930	chr1:180031321-180220723	Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv533073	chr1:180031328-180217612	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv916937	chr1:180031328-180220685	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv1007590	chr1:180121480-180236452	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv999104	chr1:180121480-180242659	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180118400-180123000	Weak transcription	Right Atrium	heart
2	chr1:180119600-180122000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:180119600-180122800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:180119600-180122800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:180119600-180123000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:180119600-180123000	Enhancers	NHDF-Ad	bronchial
7	chr1:180119600-180123000	Enhancers	NHLF	lung
8	chr1:180119800-180121800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:180119800-180122200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:180120400-180122200	Enhancers	HMEC	breast
11	chr1:180120400-180122800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:180120400-180122800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:180120400-180122800	Weak transcription	Fetal Lung	lung
14	chr1:180120400-180123000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:180120600-180121800	Weak transcription	Dnd41	blood
16	chr1:180120800-180122800	Weak transcription	Fetal Heart	heart
17	chr1:180121000-180123000	Weak transcription	Primary B cells from cord blood	blood
18	chr1:180121200-180122000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr1:180121200-180122800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr1:180121200-180122800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:180121200-180123000	Weak transcription	HSMMtube	muscle
22	chr1:180121400-180121800	Enhancers	Osteobl	bone
23	chr1:180121400-180122800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:180121400-180122800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:180121400-180122800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:180121400-180122800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr1:180121400-180122800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr1:180121400-180122800	Weak transcription	Fetal Brain Female	brain
29	chr1:180121400-180122800	Weak transcription	Hela-S3	cervix
30	chr1:180121400-180122800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr1:180121400-180122800	Weak transcription	NHEK	skin
32	chr1:180121400-180123000	Weak transcription	Placenta	Placenta
33	chr1:180121400-180123000	Weak transcription	HSMM	muscle
34	chr1:180121400-180123000	Enhancers	HUVEC	blood vessel
35	chr1:180121400-180123000	Weak transcription	NH-A	brain
36	chr1:180121600-180122800	Weak transcription	A549	lung
37	chr1:180121600-180122800	Enhancers	K562	blood

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