Variant report

Variant	rs35904210
Chromosome Location	chr3:160807631-160807632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160805899..160808057-chr3:161089198..161091341,2	MCF-7	breast:
2	chr3:160806758..160810254-chr3:160813169..160817667,5	MCF-7	breast:
3	chr3:160803828..160805818-chr3:160806388..160808521,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2231256	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34184112	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34727550	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35961258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650089	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9871304	1.00[EUR][1000 genomes]
rs9882419	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv877704	chr3:160806859-160836006	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160780800-160821400	Weak transcription	Fetal Brain Male	brain
2	chr3:160781800-160822000	Weak transcription	Thymus	Thymus
3	chr3:160787000-160822000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:160787200-160818800	Weak transcription	Brain Germinal Matrix	brain
5	chr3:160789600-160818800	Weak transcription	Esophagus	oesophagus
6	chr3:160796000-160817400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:160796200-160821800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:160797000-160822000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:160797600-160817200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:160798600-160821800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:160799800-160821800	Weak transcription	NHLF	lung
12	chr3:160799800-160822000	Weak transcription	HMEC	breast
13	chr3:160800200-160808000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:160800200-160818200	Weak transcription	Fetal Intestine Small	intestine
15	chr3:160800200-160820000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:160800400-160813400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:160800400-160817200	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:160800400-160818800	Weak transcription	Gastric	stomach
19	chr3:160800400-160822200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:160800400-160822400	Weak transcription	Spleen	Spleen
21	chr3:160800600-160807800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:160801000-160821800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:160801200-160822000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:160801600-160816600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:160801600-160818800	Weak transcription	Placenta	Placenta
26	chr3:160801600-160821800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:160802200-160808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:160802600-160821400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr3:160802600-160822000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:160802600-160822400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:160802800-160822000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:160803200-160808000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:160803400-160807800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr3:160803400-160819200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:160803400-160822000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:160803800-160808000	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:160803800-160822000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:160804400-160811800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:160804400-160816600	Weak transcription	Fetal Brain Female	brain
40	chr3:160804400-160818200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:160804400-160822000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:160804400-160822000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:160804600-160812800	Weak transcription	Aorta	Aorta
44	chr3:160804600-160813000	Weak transcription	Fetal Intestine Large	intestine
45	chr3:160804600-160816200	Weak transcription	Ovary	ovary
46	chr3:160804600-160816400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr3:160804600-160816600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr3:160804600-160817200	Weak transcription	Brain Anterior Caudate	brain
49	chr3:160804600-160820400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:160804600-160821800	Weak transcription	Brain Substantia Nigra	brain

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