Variant report

Variant	rs35905539
Chromosome Location	chr2:60329608-60329609
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17030159	0.94[EUR][1000 genomes]
rs34462734	0.84[EUR][1000 genomes]
rs4672360	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869086	chr2:59684680-60676096	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931913	chr2:60026285-61006476	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1002745	chr2:60292007-60364139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv2747	chr2:60322494-60367802	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:60320800-60333800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:60323200-60331200	Weak transcription	Fetal Intestine Large	intestine
3	chr2:60324200-60333600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr2:60326800-60335400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:60327600-60331800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:60327600-60331800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr2:60327800-60331400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:60327800-60331400	Weak transcription	HSMM	muscle
9	chr2:60327800-60331800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr2:60328200-60330200	Weak transcription	Thymus	Thymus
11	chr2:60328400-60330400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:60328400-60331800	Enhancers	Fetal Thymus	thymus
13	chr2:60329400-60330000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:60329400-60331200	Weak transcription	Fetal Intestine Small	intestine
15	chr2:60329600-60331200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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