Variant report

Variant	rs35909523
Chromosome Location	chr3:34448582-34448583
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34475061	1.00[AFR][1000 genomes]
rs35927017	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34446800-34449400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:34447000-34449000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:34447200-34448800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr3:34447200-34449200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:34447400-34449200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:34447400-34449200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:34447400-34449600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:34447600-34449000	Enhancers	Fetal Brain Male	brain
9	chr3:34447800-34449200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:34448000-34449400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:34448400-34448800	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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