Variant report

Variant	rs35909544
Chromosome Location	chr6:27163456-27163457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13212921	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13219354	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs34817112	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4452638	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs56862318	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs67457459	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv3356749	chr6:27155446-27163661	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs35909544	BTN3A2///BTN3A3	Cis_1M	lymphoblastoid	RTeQTL
rs35909544	BTN3A2	cis	Thyroid	GTEx
rs35909544	BTN3A2	cis	Adipose Subcutaneous	GTEx
rs35909544	BTN3A2	cis	Muscle Skeletal	GTEx
rs35909544	BTN3A2	cis	Nerve Tibial	GTEx
rs35909544	BTN3A2	cis	Esophagus Muscularis	GTEx
rs35909544	BTN3A2	cis	Whole Blood	GTEx
rs35909544	BTN3A2	Cis_1M	lymphoblastoid	RTeQTL
rs35909544	BTN3A2	cis	Skin Sun Exposed Lower leg	GTEx
rs35909544	BTN3A2	cis	lung	GTEx
rs35909544	BTN3A2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27156800-27173000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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