Variant report

Variant	rs35911110
Chromosome Location	chr7:26375218-26375219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26375094..26376675-chr7:26376861..26378996,2	K562	blood:
2	chr7:26366431..26368895-chr7:26373379..26376096,2	K562	blood:
3	chr7:26369795..26371338-chr7:26373306..26375843,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12668538	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669686	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893246	0.81[EUR][1000 genomes]
rs55648465	0.81[EUR][1000 genomes]
rs6461929	0.92[EUR][1000 genomes]
rs6950163	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788587	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2761313	chr7:26340970-26389772	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35911110	SNX10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26335200-26386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:26345600-26386200	Weak transcription	Thymus	Thymus
3	chr7:26345800-26375600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:26361800-26385400	Weak transcription	Pancreas	Pancrea
5	chr7:26367600-26378800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:26368600-26377600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:26368800-26405000	Weak transcription	Placenta	Placenta
8	chr7:26369400-26379600	Weak transcription	HepG2	liver
9	chr7:26370400-26385000	Weak transcription	Spleen	Spleen
10	chr7:26370600-26377400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr7:26372400-26376200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:26372400-26405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:26373200-26376400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:26373400-26376200	Enhancers	Primary hematopoietic stem cells	blood
15	chr7:26374400-26375400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:26374400-26375400	Flanking Active TSS	GM12878-XiMat	blood
17	chr7:26374400-26386200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:26374600-26375400	Flanking Active TSS	Primary B cells from peripheral blood	blood
19	chr7:26374600-26381000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:26374800-26375800	Enhancers	Primary B cells from cord blood	blood
21	chr7:26374800-26377400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:26374800-26382600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:26374800-26386200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr7:26375000-26414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:26375200-26375600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr7:26375200-26380200	Weak transcription	Primary T cells from cord blood	blood
27	chr7:26375200-26385000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr7:26375200-26386200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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