Variant report

Variant	rs35912065
Chromosome Location	chr2:125755252-125755253
allele	AT/CC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10167384	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10180012	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10183325	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11123071	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12616718	0.84[ASN][1000 genomes]
rs12711698	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1417116	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2421352	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2421354	0.81[EUR][1000 genomes]
rs4459740	0.82[AFR][1000 genomes]
rs6755688	0.81[AMR][1000 genomes]
rs7574445	0.81[AFR][1000 genomes]
rs7574539	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7577654	0.80[EUR][1000 genomes]
rs9308654	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv834362	chr2:125733921-125907451	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125751800-125756800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:125752400-125755400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:125752400-125755600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr2:125752400-125755800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:125753200-125755600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:125754600-125757000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr2:125755000-125755400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:125755000-125756400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:125755000-125759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:125755200-125756200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:125755200-125756800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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