Variant report

Variant	rs35918545
Chromosome Location	chr3:196330770-196330771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000270170	Chromatin interaction
ENSG00000185798	Chromatin interaction
ENSG00000114503	Chromatin interaction
ENSG00000174013	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11717827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718307	0.82[EUR][1000 genomes]
rs11719704	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098023	0.82[EUR][1000 genomes]
rs13098252	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28529075	0.81[ASN][1000 genomes]
rs28579649	0.81[ASN][1000 genomes]
rs28664893	0.81[ASN][1000 genomes]
rs35107793	0.81[ASN][1000 genomes]
rs35317744	0.82[EUR][1000 genomes]
rs73081083	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9826948	0.81[ASN][1000 genomes]
rs9827118	0.81[ASN][1000 genomes]
rs9882393	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003194	chr3:195960270-196342423	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv536894	chr3:195960270-196342423	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1003066	chr3:196098763-196414159	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv948681	chr3:196148055-197007546	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv1014692	chr3:196242249-196531824	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv878187	chr3:196245603-196554790	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv491864	chr3:196263064-196468533	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv829828	chr3:196268121-196463641	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv1010643	chr3:196288064-196788645	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
10	nsv878188	chr3:196312124-196553867	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:196325400-196336400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:196327000-196336800	Weak transcription	Gastric	stomach
3	chr3:196328400-196331000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:196329600-196336200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:196330000-196330800	Enhancers	Fetal Brain Male	brain
6	chr3:196330400-196331600	Enhancers	K562	blood
7	chr3:196330400-196331800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:196330400-196331800	Bivalent Enhancer	HepG2	liver
9	chr3:196330600-196330800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:196330600-196330800	Enhancers	Fetal Muscle Trunk	muscle
11	chr3:196330600-196331000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr3:196330600-196331000	Enhancers	Fetal Muscle Leg	muscle
13	chr3:196330600-196331000	Enhancers	Fetal Stomach	stomach
14	chr3:196330600-196331000	Enhancers	Psoas Muscle	Psoas
15	chr3:196330600-196331400	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:196330600-196331600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:196330600-196331600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:196330600-196331800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:196330600-196332200	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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